| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4907455 | 109 (0.950) | 8 (0.070) | 8/228 | NT | 7.4% | coding (379/939 nt) | PP_4316 | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | = 4907466 | 97 (0.910) | coding (368/939 nt) | PP_4316 | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
ATCCTGGCGTGCTGTGCGGCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4907300‑4907455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgccg‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTACCACAGC < NC_002947/4907466‑4907318 ATCCTGGCGTGCTGTGCGTCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACC > 1:729982/1‑150 TCCTGGCGTGCTGTGCGGCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCG > 1:2356004/1‑150 CCTGGCGTGCTGTGCGGCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGC < 1:437422/150‑1 CTGGCGTGCTGTGCGGCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCG > 2:228795/1‑150 GGCGTGCTGTGCGGCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCGCC > 2:1509916/1‑150 TGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCGCCG‑ATGCCAGCACGCGGCGCGGTGAA < 2:499840/150‑1 GACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCCCCGCGCCG‑ATGCCAGCACGCGGCGCGGTGAAT < 1:90276/150‑1 CCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCGCCG‑ATGCCAGCACGCGGC > 1:4357/1‑59 CCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCGCCG‑ATGCCAGCACGCGGC < 2:4357/59‑1 CCGGTTCCATTCACCGCGCCGCGTGCTGGCA‑TCGGCGCGGGGGATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTC < 1:1612534/146‑1 CCGGTTCCATTCACCGCGCCGCGTGCTGGCA‑TCGGCGCGGGGGATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTC > 2:1612534/1‑146 GTTCCATTCACCGCGCCGCGTGCTGGCA‑TCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCT > 1:2262015/1‑112 GTTCCATTCACCGCGCCGCGTGCTGGCA‑TCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCT < 2:2262015/112‑1 CCGCGCCG‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTA > 1:1956024/1‑150 GCGCCG‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTACC > 1:1509916/1‑150 CCG‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTACCACA < 2:915156/150‑1 CCG‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTACCACA < 2:2054208/150‑1 CG‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGG < 2:1177681/113‑1 CG‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGG > 1:1177681/1‑113 G‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTACCACAGC > 2:248884/1‑150 ATCCTGGCGTGCTGTGCGGCTGTGGTAGCTGACGTGCATGTCGAAGCCCAAGTGGGCCCGCTTGGCGATCGCCAGCCCCACTGCGCCGAGGCCGAGAATGCCCAGGCGCTTGCCACTCACCGAGGGGCTGATAACCCGGTTCCATTCACCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4907300‑4907455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgccg‑ATGCCAGCACGCGGCGCGGTGAATGGAACCGGGTTATCAGCCCCTCGGTGAGTGGCAAGCGCCTGGGCATTCTCGGCCTCGGCGCAGTGGGGCTGGCGATCGCCAAGCGGGCCCACTTGGGCTTCGACATGCACGTCAGCTACCACAGC < NC_002947/4907466‑4907318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |