| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5102714 | 111 (0.970) | 8 (0.080) | 7/224 | NT | 7.0% | coding (783/789 nt) | phhA | phenylalanine‑4‑hydroxylase |
| ? | NC_002947 | = 5102719 | 112 (1.070) | coding (788/789 nt) | phhA | phenylalanine‑4‑hydroxylase | |||||
GCGTACACCCTACCGCATCGACATTCTGCAACCGGTGTATTTCGTACTGCCGAACATGAAGCGCCTGTTCGACCTGGCCCACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5102558‑5102714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggtcgct‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGTCGATG < NC_002947/5102719‑5102573 GCGTACACCCTACCGCATCGACATTCTGCAACCGGTGTATTTCGTACTGCCGAACATGAAGCGCCTGTTCGACCTGGCCCACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAA > 2:2484119/1‑150 CCCTACCGCATCGACATTCTGCAACCGGTGTATTTCGTACTGCCGAACATGAAGCGCCTGTTCGACCTGGCCCACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT < 2:136278/150‑1 tATTCTTCAACCGGTGTATTTCGTACTGCCGAACATGAAGCGCCTGTTCGCCCTGGCCCACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑CAGGCAGCGACCTT < 1:518484/149‑1 CTGCAACCGGTGTATTTCGTACTGCCGAACATGAAGCGCCTGTTCGACCTGGCCCACGAGGACATCATGGGAATCGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑CAGGCAGCGACCTTGGGT < 2:884438/150‑1 ACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑CAGGCAGCGACCTTGGG > 2:1680326/1‑94 ACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑CAGGCAGCGACCTTGGG < 1:1680326/94‑1 CATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑CAGGCAGCGACCTTGGGT > 1:2274640/1‑85 CATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑CAGGCAGCGACCTTGGGT < 2:2274640/85‑1 TTCCACCCAAGGTCGCTGCCTG‑AGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCAT > 2:1322872/1‑82 TTCCACCCAAGGTCGCTGCCTG‑AGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCAT < 1:1322872/82‑1 CAAGGTCGCT‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAAT < 2:3007816/150‑1 CAAGGTCGCT‑CAGGCAGCGACCTTGGGGGGAAAGTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGCCGAACAGGCGCTCCAGGTTCGGCAGAACGAAAGAAAACGGTTcccaaac > 2:504230/1‑143 AGGTCGCT‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCTAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGT < 1:2536809/150‑1 TCGCT‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGTCGA < 1:2596980/150‑1 CGCT‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGTCGAT < 1:1802113/150‑1 CGCT‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGTCGAT < 2:554295/150‑1 GCT‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGTCGATG > 2:1799677/1‑150 GCGTACACCCTACCGCATCGACATTCTGCAACCGGTGTATTTCGTACTGCCGAACATGAAGCGCCTGTTCGACCTGGCCCACGAGGACATCATGGGCATGGTCCATAAAGCCATGCAGCTGGGTCTGCATGCACCGAAGTTTCCACCCAAGGTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5102558‑5102714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggtcgct‑CAGGCAGCGACCTTGGGTGGAAACTTCGGTGCATGCAGACCCAGCTGCATGGCTTTATGGACCATGCCCATGATGTCCTCGTGGGCCAGGTCGAACAGGCGCTTCATGTTCGGCAGTACGAAATACACCGGTTGCAGAATGTCGATG < NC_002947/5102719‑5102573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |