| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5105464 | 116 (1.010) | 6 (0.060) | 6/228 | NT | 5.3% | coding (2696/3021 nt) | ydiJ | putative oxidoreductase |
| ? | NC_002947 | = 5105482 | 107 (1.000) | coding (2678/3021 nt) | ydiJ | putative oxidoreductase | |||||
GAGCTTCGTGCCCATAGGTACCGGACATACCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5105309‑5105464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcccgAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTGGT < NC_002947/5105482‑5105337 GAGCTTCGTGCCCATAGGTACCGGACATACCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGC > 1:1648226/1‑150GAGCTTCGTGCCCATAGGTACCGGACATACCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGC > 2:2077659/1‑150 TTCGTGCCCATAGGTACCGGACATACCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCCCATTGGTCTTCTCGGTGCAGTGCGCCATCCGGCGCAAGCTGCC > 2:1240029/1‑150 CCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCC < 2:1708250/125‑1 CCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCC > 1:1708250/1‑125 GTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAG < 2:182617/108‑1 GTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAG > 1:182617/1‑108 TCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCC > 1:2875546/1‑103 TCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCC < 2:2875546/103‑1 CCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCGAGCAGGCGCCTGCCGCACCGGGCA > 2:1427858/1‑114 CCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCGAGCAGGCGCCTGCCGCACCGGGCA < 1:1427858/114‑1 CGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCC > 2:65237/1‑80 CGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCC < 1:65237/80‑1 ATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCGAGCAGGCGCCTGCCGCACCGGGC < 2:1456460/67‑1 ATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCGAGCAGGCGCCTGCCGCACCGGGC > 1:1456460/1‑67 GCTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCG < 1:864618/59‑1 GCTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCG > 2:864618/1‑59 CTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGT < 2:533964/150‑1 CTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACC < 1:1626389/84‑1 CTGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACC > 2:1626389/1‑84 TGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTG < 2:2788258/150‑1 TGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTG < 1:2782923/150‑1 TGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTG > 2:3061623/1‑125 TGCCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTG < 1:3061623/125‑1 CCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTGGT > 1:1284196/1‑150 CCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTG > 2:2854499/1‑148 CCCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTG < 1:2854499/148‑1 CCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGG < 2:1609548/72‑1 CCGAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGG > 1:1609548/1‑72 GAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGG < 2:1211546/121‑1 GAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGG > 1:1211546/1‑121 GAGCTTCGTGCCCATAGGTACCGGACATACCACAGCAACCGGTGGCCTCGGTCACCAGCTTCAGCCCCAGACGGGCGAACACCTGCTCCCACTGCCGGGTGCTGGCCGGCACATTGGTCTTCTCGGTGCAGTGCGCCATCAGGCGGAAGCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5105309‑5105464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcccgAGCAGGCGCCTGCCGCACCGGGCAGCTTCCGCCTGATGGCGCACTGCACCGAGAAGACCAATGTGCCGGCCAGCACCCGGCAGTGGGAGCAGGTGTTCGCCCGTCTGGGGCTGAAGCTGGTGACCGAGGCCACCGGTTGCTGTGGT < NC_002947/5105482‑5105337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |