| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5274048 = | 112 (0.980) | 6 (0.060) | 5/218 | NT | 5.9% | intergenic (+22/+84) | rlmG/PP_4649 | ribosomal RNA large subunit methyltransferase G/hypothetical protein |
| ? | NC_002947 | 5274121 = | 91 (0.890) | intergenic (+95/+11) | rlmG/PP_4649 | ribosomal RNA large subunit methyltransferase G/hypothetical protein | |||||
GCGTCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5274205‑5274048‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAAC > NC_002947/5274121‑5274268 GCGTCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAGGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCA > 2:325870/1‑150 TCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGC < 2:821866/150‑1 GCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCC > 1:1516933/1‑150 GCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCACCAAGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCC > 1:2493451/1‑150 GCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCT < 2:2622857/150‑1 GATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCGCAGGCGTTGCCGGTGTTCGCGGGCAAGCC > 1:416175/1‑123 GATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCGCAGGCGTTGCCGGTGTTCGCGGGCAAGCC < 2:416175/123‑1 GCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGC > 1:1079895/1‑129 GCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGC < 2:1079895/129‑1 CCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCAT < 1:2894469/103‑1 CCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCAT > 2:2894469/1‑103 GGCAACGCGCTAGATGGCACAGGCGTTGCCTG‑CTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCg < 2:2108584/103‑2 GGCAACGCGCTAGATGGCACAGGCGTTGCCTG‑CTTCGTGGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCA > 1:2108584/1‑103 GGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTT < 1:2073024/150‑1 GGGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTT < 2:3031890/150‑1 GGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCTCCACACACAGCGCTGCAACGAACATTGACGAGATCAGCAGCGGCCAACCCAGTCGCTGCCACAGCGGTTTCTTG > 1:2507494/1‑150 GGCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTG > 2:2263283/1‑150 GCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGT > 1:2609996/1‑150 GCAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGAACTGCAGCAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGT > 1:29501/1‑150 CAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCTGCACTCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCCGAGCGCCTAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTC < 1:2520655/150‑1 CAAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTC < 1:1176394/150‑1 AAGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCT > 2:3008691/1‑150 AGCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTT < 1:3025889/150‑1 GCCCGCTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTC < 1:821866/150‑1 CTGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAAC < 1:2786846/150‑1 GCGTCGCAGCGCTGGGTGTGGCGGCCTGTGTGATGCGGCTGTTCATGGGGGCGGCGGGCCTGACCACACACTGATAAAGAGCGGCAGCGGGCTTGCCCACGAAGCAGGCAACGCGCTAGATGGCACAGGCGTTGCCGGTGTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5274205‑5274048‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaagcccgctGCCGCTCTTTATCAGTGTGTGGTCAGGCCCGCCGCCCCCATGAACAGCCGCATCACACAGGCCGCCACACCCAGCGCTGCGACGCTCATCGCCCAGATCAGCAACAGCCAACCCAGTCGCTGCCACAGCGGTTTCTTGTCTTCCAAAC > NC_002947/5274121‑5274268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |