New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5653264 =	127 (1.110)	7 (0.060)	7/232	NT	5.7%	coding (99/252 nt)	PP_4962	hypothetical protein
	?	NC_002947	5653301 =	112 (1.030)					coding (62/252 nt)	PP_4962	hypothetical protein

GTCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653418‑5653264 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCAC  >  NC_002947/5653301‑5653441                                                                                                                                                                                                                                                                                                          GTCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCC                                                                                                                                                    >  2:2475670/1‑150  TCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCC                                                                                                                                                   >  1:1072530/1‑150  TCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCC                                                                                                                                                   >  2:1866261/1‑150   CGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCG                                                                                                                                                  <  2:1554748/150‑1   CGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCG                                                                                                                                                  <  2:1688842/150‑1     AGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGC                                                                                                                                                <  2:709583/150‑1                                                                                                                        GCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGC                                                                                            <  1:1172149/87‑1                                                                                                                        GCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGC                                                                                            >  2:1172149/1‑87                                                                                                                          CGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCC                                                                                                      <  1:704087/75‑1                                                                                                                          CGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCC                                                                                                      >  2:704087/1‑75                                                                                                                           GGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGA                          >  1:249629/1‑150                                                                                                                                  TGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCC                               >  2:905345/1‑138                                                                                                                                  TGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCC                               <  1:905345/138‑1                                                                                                                                                         GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCAC  >  2:637179/1‑144                                                                                                                                                         GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCAC  <  1:637179/144‑1                                                                                                                                                         GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTT                                                                                                   <  2:1072758/47‑1                                                                                                                                                         GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTT                                                                                                   >  1:1072758/1‑47                                                                                                                                                                                                                                                                                                          GTCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653418‑5653264 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCAC  >  NC_002947/5653301‑5653441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.