| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5664463 = | 124 (1.080) | 11 (0.100) | 9/236 | NT | 8.2% | intergenic (+7/+44) | PP_4971/PP_4972 | outer membrane‑bound lytic murein transglycolase A/hypothetical protein |
| ? | NC_002947 | 5664500 = | 128 (1.160) | intergenic (+44/+7) | PP_4971/PP_4972 | outer membrane‑bound lytic murein transglycolase A/hypothetical protein | |||||
CGCTTGCTTTACATCATCTGCTACCTGGCCGACTGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5664614‑5664463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCTGG > NC_002947/5664500‑5664648 CGCTTGCTTTACATCATCTGCTACCTGGCCGACTGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGC < 2:694305/150‑1 GCTTGCTTTACATCATCTGCTACCTGGCCGACTGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCC > 1:2654001/1‑150 TGCTACCTGGCCGACTGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGC > 2:906719/1‑132 TGCTACCTGGCCGACTGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGC < 1:906719/132‑1 TGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGC < 1:1490439/117‑1 TGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGC > 2:1490439/1‑117 GTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCTATCTTCGCGGG‑GGCTGCCCGCGAAGATGGCCAGC < 2:796524/107‑1 TGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAG < 2:181241/67‑1 TGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAG > 1:181241/1‑67 GCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGAC < 1:796524/107‑1 GCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCA < 1:1404710/125‑1 GCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCA > 2:1404710/1‑125 GCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGA < 2:1047060/71‑1 GCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGA > 1:1047060/1‑71 TCTTCGCGGGCAGC‑CCCCGCGAAGATGGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACC < 1:2350897/100‑1 TCTGCGCGGGCAGC‑CCCCGCGAAGATGGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACC > 2:2350897/1‑100 TTCGCGGGCAGC‑CCCCGCGAAGATGGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGT > 1:599474/1‑150 TTCGCGGGCAGC‑CCCCGCGAAGATAGCCGGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGT > 1:1758288/1‑150 GGGCAGC‑CCCCGCGAAGATAGCCGGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATAT < 2:1758288/150‑1 AGC‑CCCCGCGAAGATGGCCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACAT < 2:599474/150‑1 GCCAGCCGGTTTCAGATGGAAACCACTAAGAACGGCACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGCTGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCC > 1:1628519/1‑150 CCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCT < 2:1838265/150‑1 CCAGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCT < 2:571412/150‑1 AGCCGGTTTCAGATGGAAACCAGGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAACGAACGCAAGGCAGCCCAGTCGTCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTCATATACATCACCCCCAGCACATCCTGG < 1:1152834/150‑1 AGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTACAGCAAGCGGCTGGTGATATACAACACCCACAGCACATTCTGG > 1:46410/1‑150 AGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCTGG < 2:2797681/150‑1 AGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCTGG < 1:1631361/150‑1 AGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCTGG < 2:719095/150‑1 AGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATA > 1:2052748/1‑126 AGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATA < 2:2052748/126‑1 CGCTTGCTTTACATCATCTGCTACCTGGCCGACTGGGCTGCCTTGCGGTCGCTGGTGTGGTTTGCCAGCCTGGCACTGATCGTGTCGTTCTTCGTGGTTTCCATCTGAAACCGGCTGGCCATCTTCGCGGGCAGC‑CCCCGCGAAGATAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5664614‑5664463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaGCCGGTTTCAGATGGAAACCACGAAGAACGACACGATCAGTGCCAGGCTGGCAAACCACACCAGCGACCGCAAGGCAGCCCAGTCGGCCAGGTAGCAGATGATGTAAAGCAAGCGGCTGGTGATATACATCACCCCCAGCACATCCTGG > NC_002947/5664500‑5664648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |