New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5681419 | 72 (0.630) | 6 (0.060) | 6/198 | NT | 9.0% | intergenic (‑85/+123) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
? | NC_002947 | = 5681488 | 63 (0.680) | intergenic (‑154/+54) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
CCACGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5681250‑5681419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcggccttgtgtcgcgaTAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTCAGGAGGTCTGTG < NC_002947/5681488‑5681340 CCACGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTG < 1:2657517/150‑1 CCACGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTG < 1:963763/150‑1 CACGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGCCCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGATGATGGATTTGTTCTTCGTGG > 2:15603/1‑150 ACGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGG > 2:367661/1‑150 CGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGA < 1:367661/150‑1 GATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAG > 1:1719854/1‑150 GATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAG > 1:744865/1‑150 ATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGC < 1:749925/150‑1 CAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTT < 1:1180331/150‑1 GATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGTGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGT > 2:332036/1‑150 GATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGT < 1:1052584/150‑1 GATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGT < 1:1321596/150‑1 TGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGT > 1:1614763/1‑150 GGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTC < 1:577514/150‑1 GGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTC > 1:2480651/1‑150 ACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCG > 2:1237944/1‑150 ACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCG > 2:824347/1‑150 GCAGCGAGGACGGACCCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAcacggg < 2:927329/150‑7 CCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTG > 2:2683315/1‑123 CCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTG < 1:2683315/123‑1 CGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGG > 1:1623231/1‑150 ACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGG > 2:387767/1‑107 ACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGG < 1:387767/107‑1 GTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCA > 1:397766/1‑150 GGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTT > 1:1083650/1‑109 GGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTT < 2:1083650/109‑1 TCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAG < 2:1623231/150‑1 CAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGT > 2:2038079/1‑107 CAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGT < 1:2038079/107‑1 ACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGT > 1:1160183/1‑58 ACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGT < 2:1160183/58‑1 CCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGAC < 2:397766/150‑1 TGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTG < 1:280314/101‑1 TGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTG > 2:280314/1‑101 GGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAG < 2:344844/150‑1 GGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCG < 1:1071873/105‑1 GGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCG > 2:1071873/1‑105 GGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACA < 1:1716919/97‑1 GGAGCGGCCTTGTGTCGCGATAAGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACA > 2:1716919/1‑97 GAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTcc > 1:830257/1‑88 GAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTcc < 2:830257/90‑3 GCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCTCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCT > 1:1898662/1‑150 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTC > 1:2153698/1‑150 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTC > 1:784458/1‑150 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTC > 1:1468870/1‑150 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTC > 1:1971188/1‑150 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCAT > 1:1272891/1‑126 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGC > 2:449168/1‑77 CCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGC < 1:449168/77‑1 CCTTGTGTAGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCAT < 2:1272891/126‑1 CTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCCATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTCA > 1:1328257/1‑150 TGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACA > 1:1056909/1‑128 TGTCGCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACA < 2:1056909/128‑1 GCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCA < 2:2573868/119‑1 GCGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCA > 1:2573868/1‑119 CGATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGGCCACCTCCGGAAGTCTG > 2:1424115/1‑150 GATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTCAGGAGGTCTGg > 1:2295723/1‑149 ATAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTCAGGAGGTCTGTG < 1:1424115/150‑1 CCACGATCAGCCAGATGGCACCAATAGCAGCGAGGACGGCACCGACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5681250‑5681419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcggccttgtgtcgcgaTAGGGCTGCGCAGCAGCCCCGGCGGTTCATGCAGTGGCAATGAAAGCCTGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAGAACGAAGCCATCAGCATCACAACAGGAACCCAGCCCACCTCAGGAGGTCTGTG < NC_002947/5681488‑5681340 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |