| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5798893 = | 103 (0.900) | 8 (0.070) | 6/234 | NT | 7.1% | coding (1026/1590 nt) | PP_5077 | hypothetical protein |
| ? | NC_002947 | 5798914 = | 109 (0.990) | coding (1005/1590 nt) | PP_5077 | hypothetical protein | |||||
GCGCCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5799045‑5798893‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCAGCCGGCGCTTCGGCAGGGGCCTTG > NC_002947/5798914‑5799061 GCGCCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATG > 1:453887/1‑150 GCCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCTAAGCC‑GCAGGCATGGG > 2:2963704/1‑150 GCCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGGG < 2:1911193/150‑1 CCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGGGC > 2:1693635/1‑150 CCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGG > 1:156532/1‑141 CCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGG < 2:156532/141‑1 CCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCATGCCTGC‑GGCTTGGGCCAGCGGCTC > 1:1797076/1‑110 CCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCATGCCTGC‑GGCTTGGGCCAGCGGCTC < 2:1797076/110‑1 TCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCATGCCTGC‑GGCTTGGGCCAGCGGCTC > 2:938138/1‑93 TCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCATGCCTGC‑GGCTTGGGCCAGCGGCTC < 1:938138/93‑1 CAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGG > 1:3005856/1‑72 CAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGG < 2:3005856/72‑1 CCAAGCC‑GCAGGCATGGGCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCA > 2:1749503/1‑143 CCAAGCC‑GCAGGCATGGGCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCA < 1:1749503/143‑1 CCAAGCC‑GCAGGCATGGGCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTG > 1:2152871/1‑139 CCAAGCC‑GCAGGCATGGGCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTG < 2:2152871/139‑1 gTGGGCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCAGCCGGCGCTTCGGCAGGGGC > 2:2103291/2‑150 GGCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCAGCCGGCGCTTCGGCAGGGGCCTT < 1:1911193/150‑1 GCCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCAGCCGGCGCTTCGGCAGGGGCCTTG > 1:401022/1‑150 CCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCA > 2:1648015/1‑83 CCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCA < 1:1648015/83‑1 GCGCCGGCTGCCCAGGCCCAGTTGCCACTGGGCGACGGCAAGCAGGGTGCTGCCATCGAGTTCTCTGGCTCGTCCCAGCCAATGCCGCTGCCACTGGTTGGCCAGTCGCAGCCGGTGATGCGCGAGCCGCTGGCCCAAGCC‑GCAGGCATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5799045‑5798893‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcCAGCGGCTCGCGCATCACCGGCTGCGACTGGCCAACCAGTGGCAGCGGCATTGGCTGGGACGAGCCAGAGAACTCGATGGCAGCACCCTGCTTGCCGTCGCCCAGTGGCAACTGGGCCTGGGCAGCCGGCGCTTCGGCAGGGGCCTTG > NC_002947/5798914‑5799061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |