| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6019304 = | 112 (0.980) | 4 (0.040) | 4/198 | NT | 5.1% | intergenic (‑49/+96) | dadX/dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase |
| ? | NC_002947 | 6019380 = | 58 (0.620) | intergenic (‑125/+20) | dadX/dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase | |||||
CTGGATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6019474‑6019304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > NC_002947/6019380‑6019527 CTGGATATCTCCCGTGATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTTACCAGCAGTAACAGACTGTGCCGGCCCATTTGCCGGCTTGCCCGCTCCCAAAGGAACACCACCGCTTTTGAAAGCTGTGCACGACC < 1:478048/150‑1 TGGATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCT < 2:2486039/150‑1 TGGATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCT < 2:1527625/150‑1 GATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGT < 2:693216/150‑1 GATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGT < 2:2326292/150‑1 GATATCTCCCGTTATGGCAATAGCAGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGT < 2:2231602/150‑1 TATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG < 1:2311185/150‑1 TATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCACGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGG < 1:2683900/150‑1 TCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGC > 2:1431554/1‑150 TCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGC < 1:40758/150‑1 CCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG < 1:420815/150‑1 CCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG < 1:3026316/150‑1 CCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG < 2:1500953/150‑1 CCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGG < 1:2602728/150‑1 CGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGG < 1:474998/150‑1 GTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCACAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGC < 1:1106465/150‑1 GTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGC < 1:2885631/150‑1 TTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCA > 1:2077136/1‑150 TATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAA < 2:231322/150‑1 CAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCG < 1:1431554/150‑1 ACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCT > 2:1103497/1‑87 ACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCT < 1:1103497/87‑1 CCCGCTCCCACAGGAACACCACCGCATTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACG > 2:138884/1‑150 CCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGG > 1:211590/1‑150 AGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC < 2:93394/56‑1 AGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC > 1:93394/1‑56 ACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTT > 1:1793400/1‑98 ACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTT < 2:1793400/98‑1 CACGACCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTT < 2:211590/150‑1 tgCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCG < 2:1630641/148‑1 CTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATA > 2:225767/1‑112 CTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATA < 1:225767/112‑1 TGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGAGCTTTGCCCGTGGTATGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAAT > 1:2675494/1‑150 GGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGA < 2:1051490/103‑1 GGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGA > 1:1051490/1‑103 GCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGT > 2:250969/1‑150 CGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTC < 1:11491/150‑1 CGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTC < 1:1500953/150‑1 GCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGC < 1:86544/150‑1 AAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCGCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCA > 1:1006010/1‑150 GCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCTGCTTCTTGCGCGCAATCAGGTCGGCCAGC > 2:1694346/1‑150 GCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGACCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGC > 2:2061449/1‑150 CCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCA > 1:2769646/1‑150 CCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAG > 2:1512242/1‑150 CCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCAGATATTGCCATAACGGGAGATATCCAAGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGAAG > 2:1493352/1‑150 cCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTAGGCCAGCAGGC < 2:478048/149‑1 GCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > 1:1888596/1‑150 GCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > 2:1642013/1‑150 GCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > 2:2685694/1‑150 CTGGATATCTCCCGTTATGGCAATAGCCGGGAAGTGGCCAAGCACGGGCAAAGCGCGCCGGCTCACCAGCAGTAACAGCCTGTGCCGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6019474‑6019304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGC > NC_002947/6019380‑6019527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |