| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6087620 = | 122 (1.070) | 5 (0.050) | 5/226 | NT | 4.5% | intergenic (+15/‑215) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase |
| ? | NC_002947 | 6087702 = | 99 (0.930) | intergenic (+97/‑133) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6087776‑6087620‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGA > NC_002947/6087702‑6087844 AACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTAC < 2:1783553/150‑1AACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTAC < 1:1018019/150‑1 ACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACC < 2:1590668/150‑1 ACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGC < 1:2944995/150‑1 CAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAA < 2:547085/150‑1 AAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTA < 1:2888869/131‑1 AAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTA > 2:2888869/1‑131 ACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTAC < 1:2878666/89‑1 ACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTAC > 2:2878666/1‑89 GGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCG > 1:525157/1‑150 CCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCC < 1:1981417/124‑1 CCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCC > 2:1981417/1‑124 TCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGGCCCTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCT > 2:2133444/1‑150 CAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCA < 2:525157/150‑1 ACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGAC < 1:2133444/150‑1 CCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGT < 1:2124820/124‑1 CCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGT > 2:2124820/1‑124 CCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCAT > 1:2743939/1‑53 CCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCAT < 2:2743939/53‑1 CCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGA > 2:1263683/1‑150 CCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGA < 1:547085/150‑1 GAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAA < 2:1768286/131‑1 GAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAA > 1:1768286/1‑131 AAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGT < 2:1259546/117‑1 AAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGT > 1:1259546/1‑117 AACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6087776‑6087620‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACAACAATGCTGACGA > NC_002947/6087702‑6087844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |