New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2033772 =	14 (0.120)	12 (0.110)	10/234	NT	39.1%	coding (1210/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2033794 =	24 (0.220)					coding (1232/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase

GCAGCTGGACATGGAATCCAACGGCAAGAGCGTGCTGCAAGACGGTACCCCGGTGAAGACCGACACCGGGCCGGTGATCTGGGGCGGCGTGGGCTGCAACGGCCAGCATGCCTACCACCAGTTGCTGCACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGCCT  >  NC_002947/2033624‑2033920                                                                                                                                                     |                                                                                                                                                     ttttcgatgtctgcttcgttgcggacttgggcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccacc                                                                                                                                                     <  1:1950184‑M1/2‑1 (MQ=255)            tgcttcgttgaggcctttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccacc                                                                                                                                                     >  2:75224‑M1/138‑139 (MQ=255)            tgcttcgttgaggcctttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccacc                                                                                                                                                     <  1:75224‑M1/2‑1 (MQ=255)                     gaggcctttagcgcgcaattcggcttcggcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCgg                                                                                                                                 <  1:2963625‑M1/22‑1 (MQ=255)                       ggcctttagcgcgcaattcggcttcggcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCggtg                                                                                                                               >  2:2963625‑M1/127‑150 (MQ=255)                       ggcctttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccggtttgaagctcaccaCCGGCCGATTTCATCGTGCCggtg                                                                                                                               >  2:1496548‑M1/127‑150 (MQ=255)                        gcctttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatccgcgccttgctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCggtgg                                                                                                                              >  2:1950184‑M1/126‑150 (MQ=255)                                     aattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccac                                                                                                                                                      >  2:825091‑M1/113‑113 (MQ=255)                                     aattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccac                                                                                                                                                      <  1:825091‑M1/1‑1 (MQ=255)                                                         gcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCggt                                                                                                                                <  1:1941848‑M1/23‑1 (MQ=255)                                                         gcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCggt                                                                                                                                >  2:1941848‑M1/93‑115 (MQ=255)                                                                    ccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCgg                                                                                                                                 >  1:1967304‑M1/82‑103 (MQ=255)                                                                    ccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCgg                                                                                                                                 <  2:1967304‑M1/22‑1 (MQ=255)                                                                               gcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccac                                                                                                                                                      <  1:1931447‑M1/1‑1 (MQ=255)                                                                               gcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccac                                                                                                                                                      >  2:1931447‑M1/71‑71 (MQ=255)                                                                                      tctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCGgtggtg                                                                                                                            >  2:2679808‑M1/64‑90 (MQ=255)                                                                                      tctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCGgtggtg                                                                                                                            <  1:2679808‑M1/27‑1 (MQ=255)                                                                                                       gcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCGGTGGTGAg                                                                                                                          >  2:1417831‑M1/47‑75 (MQ=255)                                                                                                       gcgtacagccactggtggtggtcggccaccgggttgaagctcaccaCCGGCCGATTTCATCGTGCCGGTGGTGAg                                                                                                                          <  1:1417831‑M1/29‑1 (MQ=255)                                                                                                                            gctgcACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGa                          <  1:1590976/150‑1 (MQ=32)                                                                                                                             ctgaACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGaa                         <  2:1732264/150‑1 (MQ=17)                                                                                                                              tgcACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCTGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAg                        >  2:2214923/1‑150 (MQ=17)                                                                                                                               gcACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGc                       <  1:1998821/150‑1 (MQ=32)                                                                                                                               gcACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGc                       <  2:2647384/150‑1 (MQ=32)                                                                                                                               gcACCAGGGCACCCAGTTGAATCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGc                       <  2:2596988/150‑1 (MQ=17)                                                                                                                                     gggCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAAtt                 <  1:311389/150‑1 (MQ=32)                                                                                                                                     gggCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAAtt                 >  1:1064876/1‑150 (MQ=32)                                                                                                                                         aCCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTgcgc             >  1:112610/1‑150 (MQ=32)                                                                                                                                          cccAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTgcgcg            <  1:1263526/150‑1 (MQ=32)                                                                                                                                           ccAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTgcgcgc           >  1:23254/1‑150 (MQ=32)                                                                                                                                             aGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTa         >  2:2836747/1‑150 (MQ=32)                                                                                                                                               ttGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTaaa       >  2:1352790/1‑150 (MQ=32)                                                                                                                                               ttGATTCCGGCCGATTTCACCGCCACGCTGGCAAGCTGCAACCCGGGTGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGGGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTaaa       <  1:2980132/150‑1 (MQ=11)                                                                                                                                                tGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAg      <  1:343020/150‑1 (MQ=32)                                                                                                                                                   ttCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGcc   >  2:2760862/1‑150 (MQ=32)                                                                                                                                                   caCCGGCCGATTTCATCGTGCCGGTAGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGcc   <  1:110026‑M1/148‑1 (MQ=255)                                                                                                                                                    tCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGCCt  <  1:423082/150‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                                     GCAGCTGGACATGGAATCCAACGGCAAGAGCGTGCTGCAAGACGGTACCCCGGTGAAGACCGACACCGGGCCGGTGATCTGGGGCGGCGTGGGCTGCAACGGCCAGCATGCCTACCACCAGTTGCTGCACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGCCT  >  NC_002947/2033624‑2033920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.