| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2474183 | 28 (0.240) | 11 (0.120) | 10/198 | NT | 24.5% | intergenic (‑45/+135) | PP_2167/tal | PhoD‑like phosphatase/transaldolase |
| ? | NC_002947 | = 2474205 | 45 (0.480) | intergenic (‑67/+113) | PP_2167/tal | PhoD‑like phosphatase/transaldolase | |||||
GTTGGGTAGTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAG > NC_002947/2474042‑2474331 | gatGGGTAGTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGTCGCCGCAGTACCCGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCTGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTActt < 1:518100/148‑3 (MQ=255) gggTAGTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGa > 2:1563607/1‑150 (MQ=255) tAGTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCa < 2:163438/150‑1 (MQ=255) tAGTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCa < 1:183000/150‑1 (MQ=255) gTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAgt < 1:1563607/150‑1 (MQ=255) aCGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGTTGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTa < 1:1742280/150‑1 (MQ=255) ccagacggccagacgCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgc > 2:935179‑M2/1‑148 (MQ=255) tacggccagacgcTGGGGTTCCAGGCGGCGCAGTTCCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCccctacactgagcgatggaagggcggg < 2:1060850‑M1/149‑28 (MQ=255) ggccagacgCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggctt > 1:1271037‑M2/1‑142 (MQ=255) gCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgg > 2:1512017‑M2/1‑134 (MQ=255) gCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgg < 1:1512017‑M2/138‑5 (MQ=255) gggTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggc < 2:693957‑M2/136‑7 (MQ=255) gggTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggc > 1:693957‑M2/1‑130 (MQ=255) gcggcgCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACAt > 2:964842/1‑107 (MQ=255) gcggcgCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACAt < 1:964842/107‑1 (MQ=255) cggcgCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAAt < 2:2963639/150‑1 (MQ=255) tACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATaca > 2:2764070/1‑150 (MQ=255) agaACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTg < 2:2695497/150‑1 (MQ=255) gaACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaaggg > 2:2625757‑M1/1‑76 (MQ=255) gaACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaaggg < 1:2625757‑M1/99‑24 (MQ=255) cGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaagggcgg > 1:1343214‑M1/1‑73 (MQ=255) cGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaagggcgg < 2:1343214‑M1/99‑27 (MQ=255) aGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaagggcg < 2:2669232‑M1/96‑26 (MQ=255) aGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaagggcg > 1:2669232‑M1/1‑71 (MQ=255) cAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaaggg > 1:542306‑M1/1‑66 (MQ=255) cAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaaggg < 2:542306‑M1/89‑24 (MQ=255) aaCGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCa > 1:700261/1‑79 (MQ=255) aaCGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCa < 2:700261/79‑1 (MQ=255) gTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaagggc > 1:2236510‑M1/1‑60 (MQ=255) gTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCtcctacactgatcgatgtaagggc < 2:2236510‑M1/84‑25 (MQ=255) ggggAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggcttgcccgc < 2:2594380‑M2/92‑15 (MQ=255) ggggAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggcttgcccgc > 1:2594380‑M2/1‑78 (MQ=255) gggAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggc > 2:2367005‑M2/1‑77 (MQ=255) gggAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAgcgggc < 1:2367005‑M2/83‑7 (MQ=255) ggTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCTCGAGAAGTCAAGACACGACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTg < 1:58664/150‑1 (MQ=255) gACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACtt < 1:2764070/150‑1 (MQ=255) gCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCa < 2:2095822/54‑1 (MQ=255) gCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCa > 1:2095822/1‑54 (MQ=255) gTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACaaaa > 1:257291/1‑117 (MQ=255) gTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACaaaa < 2:257291/117‑1 (MQ=255) cTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACt < 2:2067627/128‑1 (MQ=255) cTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGGGGCAAACAAAACGGGCGGAAAATACt > 1:2067627/1‑128 (MQ=255) aTGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAAc < 2:304884/112‑1 (MQ=255) aTGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAAc > 1:304884/1‑112 (MQ=255) tGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACt > 2:2765439/1‑150 (MQ=255) gcgGGCAAGCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccc > 1:2594380‑M1/1‑14 (MQ=255) gcgGGCAAGCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccc < 2:2594380‑M1/92‑79 (MQ=255) gggCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAg > 1:252556/1‑150 (MQ=255) gCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGc > 1:1815268/1‑150 (MQ=255) aaGCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggtactgcgccgcctggaaccccagcgtctggcc > 1:1271037‑M1/1‑8 (MQ=255) gcccgcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAAt > 1:205777/1‑58 (MQ=255) gcccgcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAAt < 2:205777/58‑1 (MQ=255) gCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggtactgcgccgcctggaaccc < 2:693957‑M1/136‑131 (MQ=255) gCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggtactgcgccgcctggaaccc > 1:693957‑M1/1‑6 (MQ=255) gCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctccc < 1:2367005‑M1/83‑78 (MQ=255) gCCCGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctccc > 2:2367005‑M1/1‑6 (MQ=255) cccgcccTTCCATCGCTCAGTGTAGGGgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggaactgcgccgcctggaaccccagcgtctggccgta < 2:1060850‑M2/150‑124 (MQ=255) cccgcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCtttt > 2:2572678/1‑150 (MQ=255) cccgcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGAGGTCAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCtttt > 1:2493218/1‑150 (MQ=255) ccgcccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcg > 1:1343214‑M2/1‑26 (MQ=255) ccgcccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcg < 2:1343214‑M2/99‑74 (MQ=255) ccGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggtactgcgccgcctggaaccccagc < 1:1512017‑M1/138‑135 (MQ=255) ccGCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggtactgcgccgcctggaaccccagc > 2:1512017‑M1/1‑4 (MQ=255) cgcccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccct > 1:2669232‑M2/1‑25 (MQ=255) cgcccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccct < 2:2669232‑M2/96‑72 (MQ=255) cgcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCa < 2:1815268/150‑1 (MQ=255) gcccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaac < 2:2236510‑M2/84‑61 (MQ=255) gcccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaac > 1:2236510‑M2/1‑24 (MQ=255) gcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATAc < 2:1817244/99‑1 (MQ=255) gcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATAc > 1:1817244/1‑99 (MQ=255) gcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGaa > 2:2864966/1‑131 (MQ=255) gcccTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGaa < 1:2864966/131‑1 (MQ=255) gCtcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttctcgccggcccggtactgcgccgcctggaaccccagcgtctggccgtctgg > 2:935179‑M1/1‑2 (MQ=255) cccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttc > 2:2625757‑M2/1‑23 (MQ=255) cccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttgcccctcgttc < 1:2625757‑M2/99‑77 (MQ=255) cccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttg < 2:542306‑M2/89‑67 (MQ=255) cccTTACATCGATCAGTGTAGGAgcgggcttgcccgcgaacaggccgccatagccacccgagctgtcgatgacctcccctaacccgttg > 1:542306‑M2/1‑23 (MQ=255) | GTTGGGTAGTGACGAGCCAGACGGCCAGACGCTGGGGTTCCAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAG > NC_002947/2474042‑2474331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |