| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2793794 | 18 (0.160) | 15 (0.170) | 13/188 | NT | 46.2% | intergenic (+60/+67) | PP_2445/PP_2446 | membrane protein/hypothetical protein |
| ? | NC_002947 | = 2793804 | 21 (0.240) | intergenic (+70/+57) | PP_2445/PP_2446 | membrane protein/hypothetical protein | |||||
GCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCACGAT > NC_002947/2793657‑2793953 | gCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAac > 2:1210774‑M2/1‑148 (MQ=255) gTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGCAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCGacgc < 2:1152943‑M2/150‑5 (MQ=255) gTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgc > 1:2614947‑M2/1‑146 (MQ=255) ttCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcg > 2:2686791‑M2/1‑145 (MQ=255) ctcGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaa > 2:1063807‑M2/1‑143 (MQ=255) ctcGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaa > 2:1619881‑M2/1‑143 (MQ=255) tcGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaat > 1:2301959‑M2/1‑142 (MQ=255) cGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaata > 1:501913‑M2/1‑141 (MQ=255) gACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatac > 1:2330768‑M2/1‑140 (MQ=255) tttttatcaAAGTCCTCAACATCCTGGCCCTTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTCGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGCC‑AGTG‑CCAcgcgaatacct > 2:1425138‑M2/5‑139 (MQ=255) cGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑TGC‑CAGT‑GCCacgcgaatacct > 1:1386399‑M2/1‑138 (MQ=255) cGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacct > 2:1088088‑M2/1‑138 (MQ=255) tCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑TGCCAGTG‑CCAcgcgaatacctgtgcag > 2:2585601‑M2/1‑133 (MQ=255) cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatac < 2:2021488‑M2/134‑11 (MQ=255) cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatac > 1:2021488‑M2/1‑124 (MQ=255) aTCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacct < 2:2515708‑M2/130‑13 (MQ=255) aTCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacct > 1:2515708‑M2/1‑118 (MQ=255) aTCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaata < 2:1176280‑M2/127‑10 (MQ=255) aTCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaata > 1:1176280‑M2/1‑118 (MQ=255) ttgtccgcAAGAGGGGCGCGAGGCGCCCCTTTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAAcgc < 1:3031310‑M1/70‑1 (MQ=255) ttgtccgcAAGAGGGGCGCGAGGCGCCCCTTTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAAcgc > 2:3031310‑M1/9‑78 (MQ=255) gCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacc < 1:2174550‑M2/44‑12 (MQ=255) gCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacc > 2:2174550‑M2/1‑33 (MQ=255) gCACAGGTATTCGCGTT‑GCC‑AGTG‑CC‑ACGCGAATACCTGTGCAGCGGGCTTGTCCGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCggg < 1:1361912/146‑2 (MQ=25) gCACAGGTATTCGCG‑T‑TGC‑‑CAGTGCCACGCGAATACCTGTGCAGCGGGCTTGTCCGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGt > 2:1361912/1‑146 (MQ=25) acaGGTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAgg > 1:1657401/1‑150 (MQ=255) caGGTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGTCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggg > 2:1157315/1‑149 (MQ=255) aGGTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggtg > 2:1842198/1‑150 (MQ=255) gTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtc < 1:2274979‑M2/150‑131 (MQ=255) gTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtcagcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacg < 2:1893572‑M2/119‑100 (MQ=255) gTATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtcagcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacg > 1:1893572‑M2/1‑20 (MQ=255) gTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggtggt > 1:2232465/1‑150 (MQ=255) gTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTGGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGCTCGCTCACCCCGGCATGCCGCCGGGGCCGTGTTACTGGCTGTGGCTAGGCTGGTGCCTGCGGTGGCAggtggt > 1:201354/1‑150 (MQ=255) tATTCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtcg < 2:960428‑M2/150‑132 (MQ=255) tATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGgtggtg > 1:539188/1‑150 (MQ=255) tATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGgtggtg > 2:1805624/1‑150 (MQ=255) aTTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGgtgt < 1:1805624/150‑1 (MQ=255) ttCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtcgag < 2:2152368‑M2/150‑134 (MQ=255) ttCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaac > 1:508893‑M2/1‑17 (MQ=255) ttCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaac < 2:508893‑M2/82‑66 (MQ=255) ttCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggc > 2:3060376‑M2/1‑17 (MQ=255) ttCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggc < 1:3060376‑M2/64‑48 (MQ=255) tCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacat > 1:1917395‑M2/1‑16 (MQ=255) tCGCG‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacat < 2:1917395‑M2/77‑62 (MQ=255) tCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCt < 2:122792/105‑1 (MQ=255) tCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCt > 1:122792/1‑105 (MQ=255) gcg‑T‑GGC‑ATTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCAt < 1:1152943/150‑1 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccag > 1:2653882‑M2/1‑14 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccag < 2:2653882‑M2/119‑106 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttca < 2:1256616‑M2/84‑71 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttca > 1:1256616‑M2/1‑14 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtc > 1:3032801‑M2/1‑14 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAacgcgaatacctgtgcagcgggcttgtc < 2:3032801‑M2/42‑29 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCgggg < 1:3051458/97‑1 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCgggg > 2:3051458/1‑97 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGt > 1:2265120/1‑125 (MQ=255) gcg‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGt < 2:2265120/125‑1 (MQ=255) t‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCAccc < 1:131066/78‑1 (MQ=255) t‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCAccc > 2:131066/1‑78 (MQ=255) gC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGAcgc < 2:2232465/150‑1 (MQ=255) c‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGAcgcc > 2:1914581/1‑150 (MQ=255) gCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtcgagaacgccatggccgc > 2:1386399‑M2/1‑3 (MQ=255) gCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCACg > 2:1735796/1‑150 (MQ=255) aaCGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCACGAt > 1:1138971/1‑150 (MQ=255) | GCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑T‑GGC‑ACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCACGAT > NC_002947/2793657‑2793953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |