New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5786551	50 (0.440)	4 (0.040)	4/196	NT	7.6%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786588	57 (0.620)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin

GGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGG  >  NC_002947/5786446‑5786732                                                                                                                                               |                                                                                                                                                 ggATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  2:2698932‑M2/1‑143 (MQ=255) ggATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGTTGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  1:1011623‑M2/1‑143 (MQ=255) ggATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  1:2895838‑M2/1‑143 (MQ=255) ggATGCAAGCCTACCCGTAGCGACCGCAGGGGTGGGGCAAGCACCTGGAAATCAACTGCTCTTCCTGATTAGCGCCGAATCCTGTGGAAGCGGGCGTGCCCGCGAAGCAGGGAAATTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  1:647943‑M2/1‑143 (MQ=255)       aaGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgc                                                                                                                                     >  2:1228857‑M2/1‑137 (MQ=255)         gCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgccc                                                                                                                                   >  1:1849923‑M2/1‑135 (MQ=255)          ccTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           <  2:2392149‑M2/141‑8 (MQ=255)          ccTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  1:2392149‑M2/1‑134 (MQ=255)            tACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgct                                                                                                                                >  1:2325283‑M2/1‑132 (MQ=255)                          gccgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAAcc                                                                                                                  >  1:467262/1‑150 (MQ=255)                                     gCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACaa                                                                                                                         <  2:2393888/132‑1 (MQ=255)                                     gCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACaa                                                                                                                         >  1:2393888/1‑132 (MQ=255)                                          cACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCgg                                                                                                  >  2:1037425/1‑150 (MQ=255)                                              tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttggcgt                                                                                                                                           <  1:187791‑M2/105‑8 (MQ=255)                                              tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  2:187791‑M2/1‑98 (MQ=255)                                                 aaaTCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgc                                                                                                                                     >  1:58435‑M2/1‑95 (MQ=255)                                                 aaaTCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgc                                                                                                                                     <  2:58435‑M2/108‑14 (MQ=255)                                                   aTCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAAt                                                                                         <  1:20152/150‑1 (MQ=255)                                                    tCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa                                                                                                             >  1:408637/1‑129 (MQ=255)                                                    tCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa                                                                                                             <  2:408637/129‑1 (MQ=255)                                                       gctgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAAAGTAATGGATTGCACAGGCTTCGCCGGTGTTCGCGGGCACGCCCGATCCCACAAGGAAACCGTGAACCCAACACCGGAGGTGAAATgacc                                                                                     >  2:1367290/1‑150 (MQ=38)                                                          gctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgac                                                                                  >  1:2641300/1‑150 (MQ=255)                                                                ccTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgc                                                                                                                                     >  2:91842‑M2/1‑80 (MQ=255)                                                                ccTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgc                                                                                                                                     <  1:91842‑M2/93‑14 (MQ=255)                                                                 cTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcac                                                                                                                                       >  2:2541180‑M2/1‑79 (MQ=255)                                                                 cTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcac                                                                                                                                       <  1:2541180‑M2/90‑12 (MQ=255)                                                                  tGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGAt                                                                                              >  2:288344/1‑130 (MQ=255)                                                                  tGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGAt                                                                                              <  1:288344/130‑1 (MQ=255)                                                                      tAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGaaa                                                                                                                    <  2:2861043/104‑1 (MQ=255)                                                                      tAGCGCCGAATCCTGTGGGAGCGGGCGTCCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGaaa                                                                                                                    >  1:2861043/1‑104 (MQ=255)                                                                                   tgtgGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACt                                                         >  1:1081018/1‑150 (MQ=255)                                                                                       ggAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgccc                                                                                                                                   >  1:1897191‑M2/1‑57 (MQ=255)                                                                                       ggAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgccc                                                                                                                                   <  2:1897191‑M2/72‑16 (MQ=255)                                                                                       ggAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa                                                                                                        >  1:2876753/1‑99 (MQ=255)                                                                                       ggAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa                                                                                                        <  2:2876753/99‑1 (MQ=255)                                                                                       ggAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGga                                                                                                 >  1:1085130/1‑106 (MQ=255)                                                                                       ggAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGga                                                                                                 <  2:1085130/106‑1 (MQ=255)                                                                                        gAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgacc                                                                                 >  2:1778973/1‑121 (MQ=255)                                                                                        gAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgacc                                                                                 <  1:1778973/121‑1 (MQ=255)                                                                                           cGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGc                                                 >  2:1889834/1‑150 (MQ=255)                                                                                            gggCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcg                                                                                                                                            <  2:578288‑M2/58‑7 (MQ=255)                                                                                            gggCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcg                                                                                                                                            >  1:578288‑M2/1‑52 (MQ=255)                                                                                             ggCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCt                                               >  1:2740824/1‑150 (MQ=255)                                                                                                gTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCaa                                            >  2:1827378/1‑150 (MQ=255)                                                                                                  gCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAAcc                                          <  2:2641300/150‑1 (MQ=255)                                                                                                   cccGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCAGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCg                                         >  2:389093/1‑150 (MQ=255)                                                                                                    ccGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggc                                                      >  2:540032‑M2/1‑44 (MQ=255)                                                                                                    ccGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggc                                                      <  1:540032‑M2/136‑93 (MQ=255)                                                                                                    ccGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGc                                        >  2:2195595/1‑150 (MQ=255)                                                                                                     cgcgAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctccc                                                                                                                             <  1:1839405‑M2/64‑22 (MQ=255)                                                                                                     cgcgAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctccc                                                                                                                             >  2:1839405‑M2/1‑43 (MQ=255)                                                                                                     cgcgAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgac                                                                                      <  2:931060/103‑1 (MQ=255)                                                                                                     cgcgAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGAAAACCGTGAACCCAACACCGGAGATGAAATgac                                                                                      >  1:931060/1‑103 (MQ=255)                                                                                                        gAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatcccggg                                    <  2:1958245‑M2/150‑111 (MQ=255)                                                                                                               gCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatcccgggctgttcc                             >  1:1958245‑M2/1‑33 (MQ=255)                                                                                                               gCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGa                                                                                            <  2:2874318/87‑1 (MQ=255)                                                                                                               gCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGa                                                                                            >  1:2874318/1‑87 (MQ=255)                                                                                                               gCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGa                             >  1:3003224/1‑150 (MQ=255)                                                                                                                     tGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACACGGCAAACGTGGACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCt                       >  2:417537/1‑150 (MQ=255)                                                                                                                     tGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCt                       >  1:1497329/1‑150 (MQ=255)                                                                                                                      gATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCATGCCCCCACTGCCACGGCCTCAAc                                           >  1:2416308/1‑129 (MQ=255)                                                                                                                      gATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCATGCCCCCACTGCAACGGCCTCAAc                                           <  2:2416308/129‑1 (MQ=255)                                                                                                                       aTGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCACCCGTTGCGACGGCCTCAACCGCCTGCCCGCCGAGCGCGTgg                     >  2:2254027/1‑150 (MQ=39)                                                                                                                        tGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgacc                                                                                     <  2:135257/85‑1 (MQ=255)                                                                                                                        tGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgacc                                                                                     >  1:135257/1‑85 (MQ=255)                                                                                                                        tGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTggg                    <  2:2740824/150‑1 (MQ=255)                                                                                                                          gATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTgg                     >  2:1940164/1‑147 (MQ=255)                                                                                                                          gATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTgg                     <  1:1940164/147‑1 (MQ=255)                                                                                                                          gATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCg                  >  1:2483861/1‑150 (MQ=255)                                                                                                                           aTTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTggg                    <  2:1092745/147‑1 (MQ=255)                                                                                                                           aTTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTggg                    >  1:1092745/1‑147 (MQ=255)                                                                                                                                aCCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgac                                                                                  >  1:1405863/1‑80 (MQ=255)                                                                                                                                aCCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgac                                                                                  <  2:1405863/80‑1 (MQ=255)                                                                                                                                 ccGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATgcgc            <  1:798767/149‑1 (MQ=255)                                                                                                                                 ccGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATgcgc            >  2:798767/1‑149 (MQ=255)                                                                                                                                    gCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGcc                                   >  2:2599072/1‑123 (MQ=255)                                                                                                                                    gCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGcc                                   <  1:2599072/123‑1 (MQ=255)                                                                                                                                    gCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATTCGCCgta        >  1:756334/1‑148 (MQ=255)                                                                                                                                     cTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGc                                        >  1:895740/1‑117 (MQ=255)                                                                                                                                     cTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGc                                        <  2:895740/117‑1 (MQ=255)                                                                                                                                      ttCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAAt      <  1:1889834/150‑1 (MQ=255)                                                                                                                                          ccGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCAc                                                          <  1:684248/94‑1 (MQ=255)                                                                                                                                          ccGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCAc                                                          >  2:684248/1‑94 (MQ=255)                                                                                                                                          ccGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATgcg             <  1:177364/139‑1 (MQ=255)                                                                                                                                          ccGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATgcg             >  2:177364/1‑139 (MQ=255)                                                                                                                                          ccGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCgg  <  1:2195595/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 GGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGG  >  NC_002947/5786446‑5786732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.