| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6009197 | 4 (0.030) | 20 (0.240) | 13/178 | NT | 81.8% | intergenic (+38/+44) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| ? | NC_002947 | = 6009208 | 6 (0.070) | intergenic (+49/+33) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein | |||||
GCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCC > NC_002947/6009061‑6009354 | tgcgaccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTccc < 1:2546974‑M1/46‑1 (MQ=255) gaccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCtgt < 1:747275‑M1/49‑1 (MQ=255) gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGAGGATTAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCcctgtg > 1:160655‑M2/1‑144 (MQ=255) accaggtgcaaggcttcctggtcagcagaaccctatccattttggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCtgtg > 2:2546974‑M1/101‑150 (MQ=255) ccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg > 2:2434632‑M1/100‑150 (MQ=255) ccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg > 2:1675902‑M1/100‑150 (MQ=255) ccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg > 1:876734‑M1/100‑150 (MQ=255) ccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg > 2:747275‑M1/100‑150 (MQ=255) cggcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTACGGCGGGGGTTCGTACAGAAGCTGATGTTTCGGCCTGACTACCTCCTGTCGGCGCTGACGCTGCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGa < 1:1597113/150‑1 (MQ=255) cggcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCcctgtggga > 1:329009‑M2/1‑141 (MQ=255) aggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGa > 2:1964517‑M1/98‑150 (MQ=255) tgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCg > 1:423116‑M1/95‑150 (MQ=255) gTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCctgtgggagcggg > 2:1222767‑M2/1‑137 (MQ=255) tcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg > 2:1661143‑M1/80‑130 (MQ=255) tcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg < 1:1661143‑M1/51‑1 (MQ=255) ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTACTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCctgtgggagcgg < 2:2928167‑M2/121‑13 (MQ=255) tatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGa < 2:2988476‑M1/53‑1 (MQ=255) tatttgctgcaggcgcctggccgccagttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGa > 1:2988476‑M1/45‑97 (MQ=255) tACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCcctgt > 1:2970‑M2/1‑74 (MQ=255) tACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCcctgt < 2:2970‑M2/79‑6 (MQ=255) agttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg > 2:2760633‑M1/20‑70 (MQ=255) agttggagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTgg < 1:2760633‑M1/51‑1 (MQ=255) gagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCggg > 1:1624023‑M1/15‑72 (MQ=255) gagggtgtcctttaGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCggg < 2:1624023‑M1/58‑1 (MQ=255) ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTctg < 2:632295‑M1/136‑1 (MQ=255) ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTctg > 1:632295‑M1/1‑136 (MQ=255) ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGcc < 1:1246816‑M1/150‑1 (MQ=255) GCCCGCTCCCACAGGGACCGCGCAATCC‑TGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt < 2:1791518‑M1/150‑1 (MQ=255) cccGCTCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgc < 2:2237801‑M2/99‑75 (MQ=255) cccGCTCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgc > 1:2237801‑M2/1‑25 (MQ=255) ccGCTCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccacc < 1:1988123‑M2/150‑127 (MQ=255) ccGCTCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgagcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatcc < 1:2928167‑M2/121‑98 (MQ=255) CCGCTCCCACAGG‑ATTTCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc < 1:1777005‑M1/150‑1 (MQ=255) CCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGc > 1:2942020‑M1/1‑104 (MQ=255) CCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGc < 2:2942020‑M1/104‑1 (MQ=255) cGCTCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccg < 2:1764353‑M2/96‑74 (MQ=255) cGCTCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccg > 1:1764353‑M2/1‑23 (MQ=255) tCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccg < 2:1382140‑M2/150‑131 (MQ=255) tCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccg < 2:3010596‑M2/150‑131 (MQ=255) tCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccg < 2:2457879‑M2/150‑131 (MQ=255) tCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacc < 2:2172568‑M2/100‑81 (MQ=255) tCCCACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacc > 1:2172568‑M2/1‑20 (MQ=255) TCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTccc < 1:1729702‑M1/111‑1 (MQ=255) TCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTccc > 2:1729702‑M1/1‑111 (MQ=255) TCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAg < 2:821885‑M1/140‑1 (MQ=255) TCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAg > 1:821885‑M1/1‑140 (MQ=255) TCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCt < 2:1215554‑M1/150‑1 (MQ=255) ccACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggccctgaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccgca < 1:2810749‑M2/150‑133 (MQ=255) ccACAGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccgca < 1:2145987‑M2/150‑133 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggccctgaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccgcac < 2:2526596‑M2/150‑134 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccgcac < 2:3018993‑M2/150‑134 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgcaacccccgcgc < 2:1709358‑M2/150‑134 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaag < 2:2751541‑M2/131‑115 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaag > 1:2751541‑M2/1‑17 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaa > 2:1777027‑M2/1‑17 (MQ=255) cacaGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaa < 1:1777027‑M2/54‑38 (MQ=255) ACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTccc > 2:2571366‑M1/1‑107 (MQ=255) ACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTccc < 1:2571366‑M1/107‑1 (MQ=255) ACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCATCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGc > 2:1047777‑M1/1‑137 (MQ=255) ACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCATCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGc < 1:1047777‑M1/137‑1 (MQ=255) aGG‑ATTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggccctgaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccgcacatg > 1:2526596‑M2/1‑14 (MQ=255) AGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGc < 2:1909784‑M1/150‑1 (MQ=255) aTTGCGCGGTCcctgtgggagcgggcgtgcccgcgaagaggcccggaagtcaggccgaaacagcagcttctgtacgaacccccgccttacccaacaaccgtttcatccgccactcaaagccaaaggtcagcgccaccgccgcacatgcca > 1:3018993‑M2/1‑11 (MQ=255) ttGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGcc > 2:2082688/1‑150 (MQ=255) gcgcGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTGTACTTACCAGGAAGCCTTGCACCTGGTCCCAGCCaa > 2:1271453/1‑150 (MQ=255) gcgGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGgcgc > 2:166449/1‑71 (MQ=255) gcgGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGgcgc < 1:166449/71‑1 (MQ=255) gcgGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGc < 2:2097935/86‑1 (MQ=255) gcgGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGc > 1:2097935/1‑86 (MQ=255) cgGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAAcc > 1:1091891/1‑150 (MQ=255) ggTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAAccc > 1:2145312/1‑150 (MQ=255) | GCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCC > NC_002947/6009061‑6009354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |