New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 601389130 (0.260)18 (0.200) 13/190 NT 43.2% intergenic (+40/+70) xpt/PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
?NC_002947 = 6013919 24 (0.270)intergenic (+68/+42) xpt/PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein

TGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCT  >  NC_002947/6013772‑6014067
                                                                                                                                                    |                                                                                                                                                    
tGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTac                                                                                                                                                    >  1:1482837‑M2/1‑148 (MQ=255)
  gACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacct                                                                                                                                                  >  1:1634024‑M2/1‑146 (MQ=255)
     agccctggTTACCGCGTTGAATCCCTTGCCCGGGTGAAGTCGCCGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACTCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGTTGCAGCACAGGTCTCGAACGCTGTGCCGTACCtgtg                                                                                                                                               <  1:438613/144‑1 (MQ=255)
     aGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtg                                                                                                                                               >  1:3048486‑M2/1‑143 (MQ=255)
      gCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGGACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              >  2:885737‑M2/1‑142 (MQ=255)
                                        gAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              >  2:2105345‑M2/1‑108 (MQ=255)
                                        gAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              <  1:2105345‑M2/116‑9 (MQ=255)
                                                                      cATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTATCGAACGCTGTGCCGTACCTGTGCGAGCGGGCGTGCCGGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCcaacagc                                                                              >  1:568318/1‑148 (MQ=255)
                                                                                   cgACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgg                                                                                                                                        <  2:907694‑M2/79‑15 (MQ=255)
                                                                                   cgACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgg                                                                                                                                        >  1:907694‑M2/1‑65 (MQ=255)
                                                                                        ccTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              <  1:2673714‑M2/68‑9 (MQ=255)
                                                                                        ccTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              >  2:2673714‑M2/1‑60 (MQ=255)
                                                                                         cTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              >  1:905801‑M2/1‑59 (MQ=255)
                                                                                         cTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgg                                                                                                                                              <  2:905801‑M2/67‑9 (MQ=255)
                                                                                                    gCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGcccc                                                >  2:1555062/1‑150 (MQ=255)
                                                                                                          ccGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGc                                          >  1:709720/1‑150 (MQ=255)
                                                                                                          ccGCTCCCACAGGTACGGCACAGCGTTCGAGACCTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGc                                          >  1:1787760/1‑150 (MQ=18)
                                                                                                             cTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctga                                                                                             <  2:117260‑M2/96‑58 (MQ=255)
                                                                                                             cTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctga                                                                                             >  1:117260‑M2/1‑39 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggc                                    <  1:209107‑M2/150‑115 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattc                                                                                                        <  2:1227869‑M2/82‑47 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattc                                                                                                        >  1:1227869‑M2/1‑36 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGcc                                                                                                                      <  1:2566878/68‑1 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGcc                                                                                                                      >  2:2566878/1‑68 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGTCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGcccc                                    >  2:2417383/1‑150 (MQ=255)
                                                                                                                ccACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGcccc                                    >  2:2006194/1‑150 (MQ=255)
                                                                                                                 cacaGGTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacgtcacccgggccagcgattcaacgcggtaaccctggct                                   <  1:1697011‑M2/150‑116 (MQ=255)
                                                                                                                  acaGGTGCAGCACAGGTCTCGAAGGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCGGGTGAGGATTTCCTTTACCGCCCTGCGGCttacacaa                                  >  2:569729/1‑143 (MQ=37)
                                                                                                                  acaGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCaa                                  >  2:1994866/1‑150 (MQ=255)
                                                                                                                  acaGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCaa                                  >  1:1390682/1‑150 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtcca                              <  2:408072‑M2/150‑121 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtcca                              <  2:1173638‑M2/150‑121 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtcca                              <  1:556243‑M2/150‑121 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcga                                                                                                      >  1:723645‑M2/1‑30 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcga                                                                                                      <  2:723645‑M2/78‑49 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcag                                                                                                                       <  1:2111010‑M2/61‑32 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcag                                                                                                                       >  2:2111010‑M2/1‑30 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTa                                                                   <  1:893958/113‑1 (MQ=255)
                                                                                                                      gTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTa                                                                   >  2:893958/1‑113 (MQ=255)
                                                                                                                       tGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccag                                                                             >  1:881942‑M2/1‑29 (MQ=255)
                                                                                                                       tGCAGCACAGGTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccag                                                                             <  2:881942‑M2/102‑74 (MQ=255)
                                                                                                                        gcagcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCAt                            >  2:2318291/1‑150 (MQ=255)
                                                                                                                         cagcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCGGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                           >  2:2218298/1‑150 (MQ=255)
                                                                                                                           gcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCtt                                                                                                             <  1:128379/66‑1 (MQ=255)
                                                                                                                           gcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCtt                                                                                                             >  2:128379/1‑66 (MQ=255)
                                                                                                                           gcaCAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCg                         >  2:2754641/1‑150 (MQ=255)
                                                                                                                             acaGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGcc                       >  1:896512/1‑150 (MQ=255)
                                                                                                                              caGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGccc                      <  1:2318291/150‑1 (MQ=255)
                                                                                                                                  gTCTCGAACGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcggttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtccagttcggcacgg                   <  1:1014376‑M2/150‑132 (MQ=255)
                                                                                                                                         aCGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtccagttcggcacggccgccct            >  2:556243‑M2/1‑12 (MQ=255)
                                                                                                                                         aCGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtccagttcggcacggccgccct            >  1:1173638‑M2/1‑12 (MQ=255)
                                                                                                                                         aCGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCtt            <  1:1994866/150‑1 (MQ=255)
                                                                                                                                          cGCTGTGCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcgatgaagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtccagttcggcacggccgccctg           >  1:408072‑M2/1‑11 (MQ=255)
                                                                                                                                            cTGTGCTGCACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCa         <  1:578679/150‑1 (MQ=255)
                                                                                                                                            cTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCa         <  1:1555062/150‑1 (MQ=255)
                                                                                                                                             tgtgCCGTacctgtgggagcgggcgtgcccgcgaagcaggtgtcgcgtttattcggtagagctgaccacaccaccttccagcgacttcacccgggccagcgattcaacgcggtaaccctggctgtccagttcggcacggccgccctggaa        <  1:2679027‑M2/150‑143 (MQ=255)
                                                                                                                                               tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGTCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACCACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAc      <  1:2417383/150‑1 (MQ=255)
                                                                                                                                               tgCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                           <  1:2283531/129‑1 (MQ=255)
                                                                                                                                               tgCCGTACATGTGGGCGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATc                           >  2:2283531/1‑129 (MQ=255)
                                                                                                                                                gCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGc                                       >  2:238057/1‑116 (MQ=255)
                                                                                                                                                gCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGc                                       <  1:238057/116‑1 (MQ=255)
                                                                                                                                                 ccGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGccc                                                 >  2:2696312/1‑105 (MQ=255)
                                                                                                                                                 ccGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGccc                                                 <  1:2696312/105‑1 (MQ=255)
                                                                                                                                                 ccGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATAcccc   >  2:597363/1‑150 (MQ=255)
                                                                                                                                                   gTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCt  >  2:1958040/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGGACAGCCAGGGTTACCGCGTTGAATCGCTGGCCCGGGTGAAGTCGCTGGAAGGTGGTGTGGTCAGCTTCATCGAATAAACGCGACACCTGCTTCGCGGGCACGCCCGCTCCCACAGGTGCAGCACAGGTCTCGAACGCTGTGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACCCTTTTATCTGGTTGCCGCCAGCCCCGCCAACAACAAGCGCTGGTAAAGTTCTTCTTTAAGCCCCTGCGGCTGCCCCAACTGCATCCGCCCCAGGTGGCTTTCATACCCCT  >  NC_002947/6013772‑6014067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.