| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 566,623 | C→T | 5.2% | intergenic (+32/+41) | bfr‑I → / ← uvrA | bacterioferritin/uvrABC excinuclease protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 566,623 | 0 | C | T | 5.2% | 351.6 / 6.4 | 117 | intergenic (+32/+41) | bfr‑I/uvrA | bacterioferritin/uvrABC excinuclease protein A |
| Reads supporting (aligned to +/- strand): ref base C (59/51); new base T (2/4); total (61/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.34e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
ATCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCAC > NC_002947/566478‑566767 | aTCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTAccg > 1:2064466/1‑149 (MQ=255) ccTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATc > 2:2096634/1‑150 (MQ=255) ccTGCGTGCGCAGCTGCCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCCGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATc > 2:127965/1‑150 (MQ=255) tgcgtgcgCAGCTGGCCGACACCGAAGAAGATCACACATACTGGCCAAACACAC‑GGAGGACGCTGTTC‑‑GCCTGTCAGCCCCGTTAAGACTACCTGCAGTCGCAGACGTAAGTTATCCACAGGCTCAAGTAAAAGCCCCTGCCAGC‑CTCgg > 1:2677533/1‑150 (MQ=255) cAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAggg < 1:1733283/150‑1 (MQ=255) gCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACCGAT‑GGTGCCAGGGGc < 2:2064466/150‑1 (MQ=255) gCCGACACCGAAGAACATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCtttt < 2:2586248/150‑1 (MQ=255) ccGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACCGAT‑GGTGCCAGGGGCtttta < 1:2735271/150‑2 (MQ=39) ccGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCttttt < 1:1439818/150‑1 (MQ=255) cGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTc < 2:2887807/150‑1 (MQ=255) acacCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCAt > 2:639737/1‑150 (MQ=255) cacCGAAGAAGATCACACCTACTGGCTTGACAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCAtt > 1:2092987/1‑150 (MQ=255) aagaagATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACC‑GATGGTGCCAggg < 2:3015874/134‑1 (MQ=255) aagaagATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGcc > 1:2386344/1‑150 (MQ=255) gaagaTCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCgg < 1:639737/150‑1 (MQ=255) aagaTCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGc > 2:2196120/1‑150 (MQ=255) gaTCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTgcgc > 2:109035/1‑144 (MQ=255) gaTCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTgcgc < 1:109035/144‑1 (MQ=255) tCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATa > 1:1789183/1‑150 (MQ=255) tCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATa > 2:1149985/1‑150 (MQ=255) acCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AACAATACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCa > 2:2281550/1‑150 (MQ=255) cTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAgg < 2:1849363/150‑1 (MQ=255) tACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGc < 1:127965/150‑1 (MQ=255) tACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGc < 2:1749171/150‑1 (MQ=255) tACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGc < 2:1789183/150‑1 (MQ=255) gCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCaa > 2:1243237/1‑136 (MQ=255) gCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCaa < 1:1243237/136‑1 (MQ=255) gCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTAt > 2:1421450/1‑150 (MQ=255) cTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATc < 1:417388/150‑1 (MQ=255) ttGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCgg > 1:1952533/1‑105 (MQ=255) ttGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATc < 2:628231/149‑1 (MQ=255) ttGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATc > 1:628231/1‑149 (MQ=255) ttGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTAATGCCCTAtac > 2:3037/1‑148 (MQ=255) agaAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGc < 1:2188218/150‑1 (MQ=255) aaGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTc < 2:2092987/150‑1 (MQ=255) ggC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATgg > 1:1313129/1‑150 (MQ=255) c‑cTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCa < 2:1666527/94‑1 (MQ=255) tGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATTCACAGACTCAAGTAAAAGCCACTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCAGGCAATACTCAGGCCCTATCCATCTCCAGGAATGGTTTc > 2:2835751/1‑150 (MQ=255) gATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCa > 2:325103/1‑150 (MQ=255) gATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGAAGATGTAAGTTACCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCa < 1:214401/150‑1 (MQ=255) aTCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAg < 2:2226885/121‑1 (MQ=255) aTCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAg > 1:2226885/1‑121 (MQ=255) aTCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAg < 1:325103/150‑1 (MQ=255) aaGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTa > 1:1140611/1‑150 (MQ=255) ggCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTCAt > 1:510005/1‑150 (MQ=255) cATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTAt > 1:705104/1‑120 (MQ=255) cATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTAt < 2:705104/120‑1 (MQ=255) cATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGc > 2:1537896/1‑150 (MQ=255) gCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGtat < 1:1537896/150‑1 (MQ=255) tGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTatat > 1:962238/1‑150 (MQ=255) tGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTatat < 1:1421450/150‑1 (MQ=255) cTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCt < 1:2128265/150‑1 (MQ=255) ccTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCa > 2:1546535/1‑150 (MQ=255) gccAGTCGCAGATGTAAGTTATCACCCGACCCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCAtc < 1:3037/148‑1 (MQ=255) aGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCg > 1:2741026/1‑150 (MQ=255) tCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCt > 2:308628/1‑150 (MQ=255) gCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTaa > 1:1984715/1‑119 (MQ=255) gCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCtt > 1:1248250/1‑139 (MQ=255) gCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCtt < 2:1248250/139‑1 (MQ=255) gCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTCTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTaa < 2:1984715/119‑1 (MQ=255) cAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCg > 2:1521238/1‑124 (MQ=255) cAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCg < 1:1521238/124‑1 (MQ=255) aGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATAGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGc > 1:3028155/1‑150 (MQ=255) gTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGt > 1:1713333/1‑121 (MQ=255) gTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGt < 2:1713333/121‑1 (MQ=255) gTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCtctt > 2:474543/1‑150 (MQ=255) aGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTg < 1:308628/150‑1 (MQ=255) aGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTg < 2:1140611/150‑1 (MQ=255) aGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCCTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGCCTGCTTCATCTCGCTCAGCTCTTCTg < 2:2677533/150‑1 (MQ=255) ttATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGgt < 1:474543/150‑1 (MQ=255) cacaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCa > 2:2433691/1‑51 (MQ=255) cacaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCa < 1:2433691/51‑1 (MQ=255) cacaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTAcc > 1:99090/1‑150 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGt < 1:883127/93‑1 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCg > 1:1044009/1‑150 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCg > 1:1926967/1‑150 (MQ=255) caGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGc < 1:2196120/150‑1 (MQ=255) aCTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTgc < 2:568833/50‑1 (MQ=255) aCTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTgc > 1:568833/1‑50 (MQ=255) aCTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAgg > 2:1053482/1‑150 (MQ=255) tCAAGTAAAAGCCCATGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCa > 1:541239/1‑150 (MQ=255) cAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATAGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCaa < 2:3028155/150‑1 (MQ=255) aaGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATgg < 1:1872879/97‑1 (MQ=255) aaGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATgg > 2:1872879/1‑97 (MQ=255) aaGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGACCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGgt > 2:1580441/1‑136 (MQ=255) aaGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGACCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGgt < 1:1580441/136‑1 (MQ=255) tgaaaaaGCCCCTGGTACCGAT‑GGTGCCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATg > 1:2136888/4‑82 (MQ=18) aGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATg > 1:1814347/1‑150 (MQ=255) tAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGAt < 2:1313129/150‑1 (MQ=255) aaaaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATc < 2:2273846/150‑1 (MQ=255) aaaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATgg < 2:2048112/92‑1 (MQ=255) aaaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATgg > 1:2048112/1‑92 (MQ=255) aaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAAt > 1:315321/1‑144 (MQ=255) aaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAAt < 2:315321/144‑1 (MQ=255) aaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTg < 2:2126058/150‑1 (MQ=255) ccccTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGccc > 2:2155260/1‑150 (MQ=255) cccTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCa > 2:2496886/1‑150 (MQ=255) ccTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCAc > 1:1706937/1‑150 (MQ=255) cTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTg < 1:2339999/122‑1 (MQ=255) cTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTg > 2:2339999/1‑122 (MQ=255) | ATCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGC‑CTGATCAAGGCCATCGGGCTGG‑‑AAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCAC > NC_002947/566478‑566767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |