BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	941,936	A→G	6.3%	V1230A (GTC→GCC)	PP_0806 ←	surface adhesion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	941,936	0	A	G	6.3%	377.1 / 9.9	129	V1230A (GTC→GCC)	PP_0806	surface adhesion protein
Reads supporting (aligned to +/- strand): ref base A (64/56); new base G (4/4); total (68/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.49e-01

Only 100 of 137 total aligned reads displayed.

CGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGC  >  NC_002947/941787‑942083

     aCCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGacgacg                                                                                                                                                >  2:1041355/1‑150 (MQ=38)

      ccGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGc                                                                                                                                               >  1:741215/1‑150 (MQ=39)

           tCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTg                                                                                                                                          <  2:1100684/150‑1 (MQ=255)

            cGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGc                                                                                                                                         <  1:1307541/150‑1 (MQ=255)

               gCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGGCGTCGTCGGTGccga                                                                                                                                      <  2:3030852/150‑3 (MQ=255)

                  gtgtGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTa                                                                                                                                   <  1:1880272/150‑1 (MQ=255)

                   tgtgATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAg                                                                                                                                  <  1:1919724/150‑1 (MQ=255)

                   tgtgATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACAATAGGCACGGCGGGTGCTTCACGCTTGGCGTGGGCAGGCGACAGGGGGAGGCTGAACAAGCCGTCGGCACCGACGACGCTGGTGAAAATTAg                                                                                                                                  >  2:1606058/1‑150 (MQ=14)

                      gATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGtt                                                                                                                               >  2:298683/1‑150 (MQ=255)

                      gATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGCCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGtt                                                                                                                               <  1:1094337/150‑1 (MQ=255)

                         atCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGcc                                                                                                                            >  1:706136/1‑150 (MQ=255)

                          tCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTTGGCACCGGCGTCGTCGGTGccgac                                                                                                                                     <  2:572816/140‑4 (MQ=11)

                          tCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTTGGCACCGGCGTCGTCGGTGccgac                                                                                                                                     >  1:572816/1‑137 (MQ=14)

                            cGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                         >  2:937420/1‑150 (MQ=255)

                            cGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGAAGCACGTCGGGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                         >  1:2241028/1‑150 (MQ=255)

                                  tgtgAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGGCAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATc                                                                                                                   <  2:2165390/150‑1 (MQ=255)

                                  tgtgAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATc                                                                                                                   <  1:298683/150‑1 (MQ=255)

                                  tgtgAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCAACGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATc                                                                                                                   <  1:465530/150‑1 (MQ=255)

                                    tgAACTCCACCAGTATCGCAACGTTGCCGGCGGCATCCATCTGACGGACGTCGAGTACTTCACCATTGGCCTGGGCCGGCGCAAGGGCGAGGCAGAACAGGCCGTCCGCACCGACGACGCCGAGGCCAATTAGGTTGCCGGCAGCATcgc                                                                                                                 >  2:812416/1‑150 (MQ=255)

                                       aCTCCAGCGGTATCGAACTGTGGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCa                                                                                                              <  2:184456/150‑1 (MQ=255)

                                        ctgcAGCGGTAGCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGCGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCAc                                                                                                             <  2:1120312/147‑1 (MQ=255)

                                             gCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCa                                                                                                        <  2:706136/150‑1 (MQ=255)

                                               ggTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAAAAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACg                                                                                                      >  1:2705915/1‑150 (MQ=255)

                                                gTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACgg                                                                                                     <  1:784333/150‑1 (MQ=255)

                                                 tATCGAACTGTTGCCGGCGGCGTCACCGAGCGGCACGTCGAGGGGTTGGCCAATAGCCTGGGGGGGCGTCAGGGTGTGGGTGATCAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGt                                                                                                    >  2:1456402/1‑150 (MQ=21)

                                                  aTCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTa                                                                                                   <  1:2468929/150‑1 (MQ=255)

                                                       aCTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAAt                                                                                                                                     <  2:2949409/111‑1 (MQ=255)

                                                          gTTGCCGGCGGCATCCACCAGACGAACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCggg                                                                                           <  2:338269/150‑1 (MQ=255)

                                                              ccGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcg                                                                                       >  1:2256304/1‑150 (MQ=255)

                                                               cggcggCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgc                                                                                      >  2:101177/1‑150 (MQ=255)

                                                                ggcggcATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgcc                                                                                     <  1:1469969/150‑1 (MQ=255)

                                                                ggcggcATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgcc                                                                                     >  2:233753/1‑150 (MQ=255)

                                                                 gcggcATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgccg                                                                                    >  2:802365/1‑150 (MQ=255)

                                                                      agccaccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGAcc                                                                               <  2:2076848/148‑1 (MQ=255)

                                                                         caccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCTGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGACTCGCCGCGACCGGt                                                                            <  2:741215/150‑1 (MQ=255)

                                                                         caccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGt                                                                            <  2:2256304/150‑1 (MQ=255)

                                                                         caccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGt                                                                            <  1:1041355/150‑1 (MQ=255)

                                                                           ccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCAc                                                                                                       <  2:1370182/121‑1 (MQ=255)

                                                                           ccaGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCAc                                                                                                       >  1:1370182/1‑121 (MQ=255)

                                                                            caGCCGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGaa                                                                         <  1:1130636/150‑1 (MQ=255)

                                                                              gACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAg                                                                       >  2:1126593/1‑150 (MQ=255)

                                                                                 gCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGa                                                                    >  2:629554/1‑150 (MQ=255)

                                                                                   aCGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgca                                                                                                                        <  1:2182789/96‑1 (MQ=255)

                                                                                   aCGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgca                                                                                                                        >  2:2182789/1‑96 (MQ=255)

                                                                                    cGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGc                                                                 >  2:2667232/1‑150 (MQ=255)

                                                                                      tCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCCCGCCGCGACCGGTGAAAGTGACGCCa                                                               >  2:843972/1‑150 (MQ=255)

                                                                                         aGTGCTTCAACATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCg                                                            >  2:1213841/1‑150 (MQ=255)

                                                                                             cTTCACAATTGGCATAGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCa                                                        >  2:2431061/1‑150 (MQ=255)

                                                                                              ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAgg                                                                                                                                 >  1:730662/1‑76 (MQ=255)

                                                                                              ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCaa                                                       >  1:2288381/1‑150 (MQ=255)

                                                                                              ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCaa                                                       >  1:2761813/1‑150 (MQ=255)

                                                                                               tCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                         >  2:2972925/1‑83 (MQ=255)

                                                                                               tCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc                                                                                                                         <  1:2972925/83‑1 (MQ=255)

                                                                                               tCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAg                                                      <  1:101177/150‑1 (MQ=255)

                                                                                                cACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAgg                                                     >  1:1436133/1‑150 (MQ=255)

                                                                                                cACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGACGGCAGCATCGCGCAATTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGTCAAgg                                                     >  2:2861308/1‑150 (MQ=255)

                                                                                                 aCCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGCCGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGACAGTGACGCCATCGGCCAAGGc                                                    >  1:343660/1‑150 (MQ=255)

                                                                                                 aCCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGc                                                    >  2:1953676/1‑150 (MQ=255)

                                                                                                 aCCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGc                                                    <  1:233753/150‑1 (MQ=255)

                                                                                                   cATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCa                                                  >  1:227627/1‑150 (MQ=255)

                                                                                                   cATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCa                                                  <  1:1171807/150‑1 (MQ=255)

                                                                                                    aTTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAg                                                 >  2:1484600/1‑150 (MQ=255)

                                                                                                    aTTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAg                                                 >  1:2962951/1‑150 (MQ=255)

                                                                                                          cTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGt                                           <  1:822723/150‑1 (MQ=255)

                                                                                                          cTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGt                                           >  2:2599489/1‑150 (MQ=255)

                                                                                                          cTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGt                                           >  2:412640/1‑150 (MQ=255)

                                                                                                            gggCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCg                                         <  1:2667232/150‑1 (MQ=255)

                                                                                                              gCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGt                                       <  2:1534576/150‑1 (MQ=255)

                                                                                                               ccGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGtt                                      <  1:629554/150‑1 (MQ=255)

                                                                                                               ccGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGtt                                      <  1:1126593/150‑1 (MQ=255)

                                                                                                                    gACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAg                                                                                                                                  <  1:1646365/53‑1 (MQ=255)

                                                                                                                    gACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAg                                                                                                                                  >  2:1646365/1‑53 (MQ=255)

                                                                                                                      cAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCgg                                                                             <  1:1981031/104‑1 (MQ=255)

                                                                                                                      cAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCgg                                                                             >  2:1981031/1‑104 (MQ=255)

                                                                                                                       aGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCCCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAggc                              <  1:843972/150‑1 (MQ=255)

                                                                                                                         ggTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAggcgg                            >  1:20997/1‑150 (MQ=255)

                                                                                                                           tGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTtgtg                                   <  1:2078693/141‑1 (MQ=255)

                                                                                                                               gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCGGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa                      >  2:150567/1‑150 (MQ=255)

                                                                                                                               gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGAc                                                                   <  1:1903481/105‑1 (MQ=255)

                                                                                                                               gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGAc                                                                   >  2:1903481/1‑105 (MQ=255)

                                                                                                                               gCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa                      >  2:1735626/1‑150 (MQ=255)

                                                                                                                                 tGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa                      >  2:365725/1‑148 (MQ=255)

                                                                                                                                 tGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa                      <  1:365725/148‑1 (MQ=255)

                                                                                                                                    aCAGGCCGTCGGCACCGACGACGCCGGTGACAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCgg                 <  1:1735626/150‑1 (MQ=255)

                                                                                                                                     catgCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACCGTAGCGCCGGGCTCGCCGCGACCGGTCAAAGTGACGCCATCGGCCAAGGCCAGGTTCCTTTGTTGTGCAGGCGGCAGCAAGTCGGc                <  1:2861308/147‑1 (MQ=21)

                                                                                                                                      aGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGcc               >  2:2161328/1‑150 (MQ=255)

                                                                                                                                       ggCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCa                                 >  2:2292226/1‑131 (MQ=255)

                                                                                                                                       ggCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCa                                 <  1:2292226/131‑1 (MQ=255)

                                                                                                                                        gCCGTCGGCACCGACGACCCCGTGGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGa             <  1:937420/150‑1 (MQ=255)

                                                                                                                                         taattggCACCGGCGTCGTCGGTGCCGATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGc                                  <  2:2539264/123‑1 (MQ=21)

                                                                                                                                         ccGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAg            <  2:2241028/150‑1 (MQ=255)

                                                                                                                                           ttCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGt          >  2:2052364/2‑150 (MQ=255)

                                                                                                                                           gTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGt          >  2:466417/1‑150 (MQ=255)

                                                                                                                                           gTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGt          >  1:1355166/1‑150 (MQ=255)

                                                                                                                                             cGGCACCGTAGACGCCGGTGCAAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGa        <  2:716865/150‑1 (MQ=255)

                                                                                                                                             cGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGa        <  2:1777833/150‑1 (MQ=255)

                                                                                                                                              ggCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGAc       <  1:2770388/150‑1 (MQ=255)

                                                                                                                                               gCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGAcc      >  1:878698/1‑150 (MQ=255)

                                                                                                                                                   cgacgaCGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGc  <  1:2260319/150‑1 (MQ=255)

                                                                                                                                                     acgacgCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGa                                                                                 <  2:2023083/69‑1 (MQ=255)

CGGTGACCGCCTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGCCGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGC  >  NC_002947/941787‑942083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`