| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,424,549 | G→C | 10.6% | intergenic (+44/+57) | PP_5467 → / ← PP_1248 | hypothetical protein/LysE family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,424,549 | 0 | G | C | 10.6% | 339.6 / 25.1 | 112 | intergenic (+44/+57) | PP_5467/PP_1248 | hypothetical protein/LysE family transporter |
| Reads supporting (aligned to +/- strand): ref base G (51/49); new base C (5/7); total (56/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.62e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
GTCGAAGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCG > NC_002947/1424404‑1424693 | gTCGAAGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCgg > 2:2021518/1‑150 (MQ=255) cGAAGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCgggg < 2:2444544/150‑1 (MQ=255) cGAAGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCgggg < 2:2500911/150‑1 (MQ=255) cGAAGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGGGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCgggg > 2:1286071/1‑150 (MQ=255) aaGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGCCCCCGGCAACTCATG‑GTTCCCggggac < 1:275389/150‑3 (MQ=255) ggCACGTTCGAAGAGCAGTACACCCTCAAGGAAGGCAAGAGCCGGGTTGCGGCGTTGGTCGTGCGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCttttt < 1:950006/150‑1 (MQ=255) gtttataaGCGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGGTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAgg < 1:44200/144‑1 (MQ=255) gTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAggg < 2:446600/150‑1 (MQ=255) tCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGtt < 1:294439/150‑1 (MQ=255) cGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGCCCCCGGCAACTCATG‑GTTCCCggggac < 2:1624415/137‑3 (MQ=255) cGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGCCCCCGGCAACTCATG‑GTTCCCggggac > 1:1624415/1‑135 (MQ=255) gAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACAAATTGACTTGGTAATGGCTGAGAGAACAAGACCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGtttc > 2:1117218/1‑148 (MQ=255) aaGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCt > 1:1065769/1‑150 (MQ=255) aaGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCt < 1:178093/150‑1 (MQ=255) gagCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGt > 1:1262869/1‑150 (MQ=255) cAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAg > 1:1242734/1‑150 (MQ=255) cAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCATTGCTAGCAAGCAATCGCTAGTATCTGGAAACCAGCTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAg < 1:2217228/150‑1 (MQ=255) aGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCACGGGAAC‑CATGGGTTGCCGGGGGCTTTTTTAGGGTTGCTGTAAgg > 1:661901/1‑150 (MQ=255) gTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGt < 1:2950092/139‑1 (MQ=255) gTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGt > 2:2950092/1‑139 (MQ=255) gTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGgc < 2:1963842/150‑1 (MQ=255) cAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGGGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGa < 1:1403821/150‑1 (MQ=255) aggaaggCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGaca < 1:1487617/150‑1 (MQ=255) ggCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGACTATGTTCAGGCGCGCCCGGACACTGTc < 1:2717389/150‑1 (MQ=255) gCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCg < 2:1800843/150‑1 (MQ=255) aaGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAg > 1:2168194/1‑117 (MQ=255) aaGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAg < 2:2168194/117‑1 (MQ=255) aaGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAg > 1:613737/1‑129 (MQ=255) aaGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAg < 2:613737/129‑1 (MQ=255) aaGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGCCCCCGGCAACTCATG‑GTTCCCGGGGACttgtt < 2:1336589/114‑1 (MQ=25) aaGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGCCCCCGGCAACTCATG‑GTTCCCGGGGACttgtt > 1:1336589/1‑111 (MQ=25) agagCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGCAACTCATG‑GTTCCCGGGGACtt < 2:1813577/110‑1 (MQ=38) agagCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGCAACTCATG‑GTTCCCGGGGACtt > 1:1813577/1‑110 (MQ=38) agCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCtt > 2:2850509/1‑150 (MQ=255) agCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCtt < 2:2069707/150‑1 (MQ=255) gCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTg > 2:2673556/1‑150 (MQ=255) gCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTg < 2:2125458/150‑1 (MQ=255) ccTGTTTGCGGCGTTTTTCGTGAGCAAGGCCTATCAGGTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTgg < 2:522910/150‑1 (MQ=255) ccTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTgg > 2:366918/1‑150 (MQ=255) ccTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTgg < 2:1262869/150‑1 (MQ=255) tGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAGCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGa > 1:213443/1‑150 (MQ=255) tGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGc > 1:1772976/1‑116 (MQ=255) tGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGc < 2:1772976/116‑1 (MQ=255) tGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGa < 2:489430/150‑1 (MQ=255) tGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGa > 2:1162528/1‑150 (MQ=255) tGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGa > 1:468924/1‑150 (MQ=255) ttGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCa < 2:298812/150‑1 (MQ=255) ttGCGGCGTTGTTAGTGAGCAAGGCTTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCa < 2:2334466/150‑1 (MQ=255) tCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATcgccgc < 1:317205/150‑1 (MQ=255) tGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAg > 2:2661321/1‑150 (MQ=255) aaGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGa > 1:1863141/1‑150 (MQ=255) aGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGAt < 1:366918/150‑1 (MQ=255) gCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGTCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGc > 2:1059039/1‑150 (MQ=255) tATCAGCTGGAAACCAATTGACTGCGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGa < 2:696247/150‑1 (MQ=255) cAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATc < 1:1059039/150‑1 (MQ=255) gCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATccc > 2:1082893/1‑150 (MQ=255) tGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAgg > 1:2070319/1‑75 (MQ=255) tGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAgg < 2:2070319/75‑1 (MQ=255) aaCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAgg > 2:1401376/1‑150 (MQ=255) aCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGc > 2:1350402/1‑150 (MQ=255) cAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCaa < 1:2661321/150‑1 (MQ=255) cAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCaa > 1:1499640/1‑150 (MQ=255) aaTTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAg > 2:1795639/1‑150 (MQ=255) gACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGCATCCCACCAGGCAAGcccc > 2:760883/1‑150 (MQ=255) tGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGc > 1:1318527/1‑150 (MQ=255) ggTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCa > 2:2951560/1‑150 (MQ=255) ggTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAATTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCa > 1:1219217/1‑150 (MQ=255) gTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTCTCAGGCGCCCCCCCAGACTGTCGCGCTTGGGACCACCCCACCGACCCCAGCCTGCTCCCGCATGCCACCAGGCAAGCCACCGCCAg > 2:1994140/1‑150 (MQ=255) tAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGc < 1:1994140/150‑1 (MQ=255) gCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTc < 1:1162528/150‑1 (MQ=255) gCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCACTACTTTTCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTc > 1:808349/1‑150 (MQ=255) cTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGa > 1:2494523/1‑72 (MQ=255) cTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGa > 1:571099/1‑112 (MQ=255) cTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGa < 2:571099/112‑1 (MQ=255) tGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGa > 2:1764865/1‑150 (MQ=255) gAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGaa < 1:2021518/150‑1 (MQ=255) tGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACat > 1:973344/1‑150 (MQ=255) aaaaagcCCCCGGCAACTCATG‑GTTCCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTc > 1:558690‑M1/8‑72 (MQ=255) aaaaagcCCCCGGCAACTCATG‑GTTCCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTc < 2:558690‑M1/65‑1 (MQ=255) aaaaagcCCCCGGCAACTCATG‑GTTCCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCaa > 2:1755377‑M1/8‑125 (MQ=255) aaaaagcCCCCGGCAACTCATG‑GTTCCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCaa < 1:1755377‑M1/118‑1 (MQ=255) aaCAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTc > 1:1381717/1‑142 (MQ=255) aaCAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTc < 2:1381717/142‑1 (MQ=255) aCAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATAtt > 2:1639537/1‑150 (MQ=255) cAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTg < 1:2850509/150‑1 (MQ=255) CCCCGGCAACTCATG‑GTTCCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAAt < 1:1976120‑M1/150‑1 (MQ=255) CCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGGAAtt < 1:2725778‑M1/150‑1 (MQ=255) CCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTc > 1:2673556‑M1/1‑150 (MQ=255) CCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTc < 2:2069656‑M1/150‑1 (MQ=255) gAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAgg > 1:1137974/1‑109 (MQ=255) gAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAgg < 2:1137974/109‑1 (MQ=255) gAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCgg < 1:1082893/150‑1 (MQ=255) gAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCgg < 1:1401376/150‑1 (MQ=255) gAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCgg < 1:1764865/150‑1 (MQ=255) c‑cATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCt > 1:819612/1‑150 (MQ=255) cATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCCGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAGTTCgcgcgcca > 1:2056393/1‑148 (MQ=255) cATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTgg < 2:2341431/136‑1 (MQ=255) cATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTgg > 1:2341431/1‑136 (MQ=255) cATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCAACAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTg > 1:2164617/1‑150 (MQ=255) tGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGgc > 1:1283573/1‑150 (MQ=255) | GTCGAAGACGGCACGTTCGAAGAGCAGTACACCTTCAAGGAAGGCAAGAGCCTGTTTGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAAC‑CATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCG > NC_002947/1424404‑1424693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |