| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 181,812 | A→G | 8.0% | intergenic (+26/‑80) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 181,812 | 0 | A | G | 8.0% | 309.4 / 13.0 | 114 | intergenic (+26/‑80) | PP_r01/PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (50/54); new base G (7/2); total (58/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.72e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
TTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAT > NC_002947/181670‑181954 | gacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAgggg > 2:874580/1‑150 (MQ=32) acCATAGAGCATTGGAACCACCTGATCCCATCCCGCACCGAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGt < 1:1695067/150‑1 (MQ=12) acCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGt < 2:1324710/150‑1 (MQ=32) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGCTGGTAGTGTGGGGTTTCCTCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtt > 2:1154049/1‑150 (MQ=17) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAgg > 2:2586031/1‑146 (MQ=32) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtt > 1:582726/1‑150 (MQ=32) cATAGAGCATTGGAACCACCTGATCCCATCCGGAAGTCAGTAGTGAAACGATGCATCGCCGATGGAAGTGTGGGGATTCCCCAGGGGAGAGTAGATCATCGTAAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGttt > 2:1699988/1‑150 (MQ=11) aTAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtttt < 2:582726/150‑1 (MQ=32) aTAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtttt < 2:2769450/150‑1 (MQ=32) aTAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtttt < 1:1847195/150‑1 (MQ=32) agagCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGt < 1:874580/150‑1 (MQ=32) gagCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTc < 1:2848748/150‑1 (MQ=32) taTTGGAACCTCCTGATCTCATCCCGAATTCAGTAGTGAATCGATGCATCGCCGATGGTAGTGTGGGGTTTACCAATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCttt < 1:2105567/149‑1 (MQ=11) ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAATCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTAGCAACGTGCAGGGCTGCACATGC‑AGGTAGGGGTTTTGTCTTTaa > 2:1781982/1‑150 (MQ=11) ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAAACCCTATCTGCACATGC‑AGGTAGGGGtttt > 1:515565/1‑142 (MQ=17) accaccTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAgg < 2:2125297/150‑1 (MQ=33) caccTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTTGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGCAGTaa < 2:2971428/150‑1 (MQ=12) accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAAc < 1:1416274/150‑1 (MQ=35) accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTCCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTACGTAGGCAc > 1:2930874/1‑150 (MQ=12) cTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTa > 1:1326597/1‑150 (MQ=38) tGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtttt < 1:2707411/131‑1 (MQ=33) tGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGtttt > 2:2707411/1‑131 (MQ=33) atcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACag > 2:1492937/1‑150 (MQ=40) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACaga < 1:94885/150‑1 (MQ=40) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAgaga > 1:425595/1‑150 (MQ=255) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAgaga > 2:2344444/1‑150 (MQ=255) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAgaga > 2:1103424/1‑150 (MQ=255) catcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGAt > 1:120237/1‑150 (MQ=255) gAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAAAACCTGT‑TGGAGCGGCGAGGTGGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAg > 2:79903/1‑150 (MQ=14) aCTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGc < 2:425595/150‑1 (MQ=255) tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAgg < 1:1220620/147‑1 (MQ=255) tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAgg > 2:1220620/1‑147 (MQ=255) gtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGG‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTa < 2:221099/150‑1 (MQ=255) tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAg < 1:422692/150‑1 (MQ=255) gAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAgg > 1:70008/1‑150 (MQ=255) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTc > 1:2412810/1‑109 (MQ=32) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTc < 2:2412810/109‑1 (MQ=33) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAggg > 1:2802807/1‑150 (MQ=255) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAggg < 2:70008/150‑1 (MQ=255) gATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGa > 2:2258796/1‑116 (MQ=35) gATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACgg < 1:2324504/150‑1 (MQ=255) gATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACgg < 2:2914973/150‑1 (MQ=255) ggTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGaa < 1:1931794/150‑1 (MQ=255) tAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAAtt > 2:1700849/1‑150 (MQ=255) gtgtGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTc < 2:1326597/150‑1 (MQ=255) tgtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCt < 1:1103424/150‑1 (MQ=255) tgtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACACGC‑ACGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTAGCAGACACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCt < 1:1781982/150‑1 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTg > 1:1068845/1‑150 (MQ=255) ggggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAgg > 1:2036661/1‑123 (MQ=255) tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACTGGCCAGCA‑CACAGAATTTCTTgacgac < 1:1492937/150‑1 (MQ=255) cccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATa < 1:2344444/150‑1 (MQ=255) cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATaga > 1:1405559/1‑150 (MQ=255) cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATaga > 2:60312/1‑150 (MQ=255) tgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCAt > 1:1776223/1‑150 (MQ=255) tagagTAGGTAATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATTC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCAtt < 2:366607/149‑1 (MQ=255) gagaGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCAtt < 1:1154049/150‑1 (MQ=255) ggTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCa > 1:2660780/1‑110 (MQ=255) ggTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCa < 2:2660780/110‑1 (MQ=255) tCATCGTCAAGATTCAGTTCGCAAAACCCCTTTCCGCACAATC‑AGGTAGGGTTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACTGGCCATCA‑CACAGAATTTTTTGACGACCATAGAGCATTTGAaccacc < 2:2930874/150‑1 (MQ=255) cATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGTTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCt < 1:673440/150‑1 (MQ=255) aTCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTg < 2:1068845/150‑1 (MQ=255) cGTCAAGATTCATTTCGCAAAACCCCTATCTGCACAGGC‑AGGTAGGGGTTTTGTCTTTAAGCCGGAACTCCAAAGTTTCGCCGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGat < 2:1782761/150‑1 (MQ=37) gTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCa < 2:3002806/81‑1 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCCGCA‑CACCGCATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcc > 1:2212372/1‑150 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTc < 2:2233076/116‑1 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTc > 1:2233076/1‑116 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcc > 1:887762/1‑150 (MQ=255) tCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGAAACCACCTGgtcc < 2:120237/150‑1 (MQ=255) aaGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAaccac < 1:737917/141‑1 (MQ=255) aaGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAaccac > 2:737917/1‑141 (MQ=255) aaGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatccca > 2:851008/1‑150 (MQ=255) aGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccat < 1:1699988/150‑1 (MQ=255) gATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTgg < 2:168763/133‑1 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCtt > 2:1875785/1‑113 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCtt < 1:1875785/113‑1 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatcc > 1:1517033/1‑150 (MQ=255) tCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAaccac < 2:2043335/136‑1 (MQ=255) tCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAaccac > 1:2043335/1‑136 (MQ=255) ttaaagacAAAACCCCTACCTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGa > 2:1641683/8‑150 (MQ=37) aaaggCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatcc < 2:2303918/141‑1 (MQ=255) aaaggCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatcc > 1:2303918/5‑145 (MQ=255) ttCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGc < 1:1390000/93‑1 (MQ=255) ttCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGc > 2:1390000/1‑93 (MQ=255) gacAAAACCCCTACCTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTca > 1:2950261/3‑150 (MQ=37) aaaaCCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca > 2:1127958/1‑150 (MQ=255) aaaCCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAg < 1:2268066/75‑1 (MQ=255) aaaCCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAg > 2:2268066/1‑75 (MQ=255) aaCCCCTACCTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGt > 2:364025/1‑150 (MQ=255) ccccTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGa > 1:1246399/1‑150 (MQ=255) ccccTACCTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGa > 2:1397264/1‑150 (MQ=37) cccTACCTGCATGTGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCa > 2:2757105/1‑105 (MQ=39) cccTACCTGCATGTGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCa < 1:2757105/105‑1 (MQ=39) cccTACCTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGaa > 1:1847464/1‑150 (MQ=37) cTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAAc > 1:235727/1‑150 (MQ=255) cTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGAAGGG‑CATCAGGATAGGAGTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATATCCCACTCAGCAGTTAAAc > 1:2491953/1‑150 (MQ=25) cTACCTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAAc > 1:2193020/1‑150 (MQ=255) aTCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGa > 1:1237406/1‑150 (MQ=255) ccTGCATGTGC‑AGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAt < 1:1397264/149‑1 (MQ=255) gCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAaccac > 1:1134063/1‑114 (MQ=255) gCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAaccac < 2:1134063/114‑1 (MQ=255) | TTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGC‑AGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCA‑CACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAT > NC_002947/181670‑181954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |