| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,642,306 | G→A | 6.1% | intergenic (‑92/+60) | PP_1442 ← / ← lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,642,306 | 0 | G | A | 6.1% | 444.3 / 11.0 | 148 | intergenic (‑92/+60) | PP_1442/lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Reads supporting (aligned to +/- strand): ref base G (71/67); new base A (5/4); total (77/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
Only 100 of 153 total aligned reads displayed.
GCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAG > NC_002947/1642157‑1642453 | gcgcgcAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCcgcg > 2:1755470/1‑150 (MQ=255) aaGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCa > 2:1059985/1‑150 (MQ=255) gCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAgg < 2:1040809/150‑1 (MQ=255) gCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAgg < 1:268709/150‑1 (MQ=255) gCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCCTTCGCGGGCAAGCCCGCACCTGCacg > 1:641396/1‑148 (MQ=255) cAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAggg < 2:2218793/150‑1 (MQ=255) aGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGc > 2:326172/1‑150 (MQ=255) gggCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TAc < 1:1052626/150‑1 (MQ=255) ggCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAgg < 2:963389/139‑1 (MQ=255) gAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAgggg < 1:2761387/138‑1 (MQ=255) tCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAgg > 2:1927010/1‑150 (MQ=255) aGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGTTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTg < 1:2484911/150‑1 (MQ=255) ggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCgg < 1:927295/150‑1 (MQ=255) aGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGGGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCCTTCGCGGGCAAGCCCGCACCTGCACGGGTACGC‑TACCCCTGCAGGCGCGGGCttac < 1:258926/150‑3 (MQ=21) cAGACGAGGAGAGGTCAGGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGCAAGCCCGCACCTGCACGGGTACGC‑TACCCCTGCAGGCGCGGGCttactc < 2:901741/150‑5 (MQ=25) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa > 1:604478/1‑150 (MQ=255) gagaGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAagag > 2:232650/1‑150 (MQ=255) gagGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAg > 1:1333434/1‑113 (MQ=255) tCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGt < 2:716661/150‑1 (MQ=255) cATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTg < 1:1755470/150‑1 (MQ=255) gtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGc > 1:1318961/1‑105 (MQ=255) gtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGc < 2:1318961/105‑1 (MQ=255) gCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTa > 2:169417/1‑150 (MQ=255) gCTCCGAAGGCTGGCGACGGCCTGAGGATCCCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTCGCG‑TCCCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTa < 2:2226084/150‑1 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAgg < 1:2902343/94‑1 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCtt > 2:262362/1‑122 (MQ=255) ccGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGaa < 1:2456110/150‑1 (MQ=255) ccGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGaa > 2:2173843/1‑150 (MQ=255) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAAc > 2:2262759/1‑150 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACa < 1:2173843/150‑1 (MQ=255) aGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGc < 1:1927010/150‑1 (MQ=255) cTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGTTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAAAGGGCGGTGCAGGCTAGAACAGCACt < 1:22510/150‑1 (MQ=255) gCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc < 1:2235675/150‑1 (MQ=255) aTGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTGAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGc < 2:2909547/128‑1 (MQ=255) ccTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGt > 2:257627/1‑150 (MQ=255) cTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTc > 2:843232/1‑150 (MQ=255) tGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCggg < 2:182506/99‑1 (MQ=255) tGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCg < 2:2876728/150‑1 (MQ=255) tGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCAGTGAAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCg > 2:1628587/1‑150 (MQ=255) gAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCgg < 1:326172/150‑1 (MQ=255) gATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCaa > 1:1552501/1‑150 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgcgc > 1:350638/1‑150 (MQ=255) cGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc < 2:829270/131‑1 (MQ=255) cGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc > 1:829270/1‑131 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCg > 1:986412/1‑86 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGc < 2:1942029/115‑1 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGc > 1:1942029/1‑115 (MQ=255) atgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTg < 2:604478/150‑1 (MQ=255) atCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCt < 2:736025/145‑1 (MQ=255) atCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCt > 1:736025/1‑145 (MQ=255) tCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGa > 2:847544/1‑150 (MQ=255) gAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGaaa > 1:2913889/1‑150 (MQ=255) gAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGaaa > 1:2924877/1‑150 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGTGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAAt > 1:1227703/1‑150 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTCCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAAt > 1:2046123/1‑150 (MQ=255) gAAATTTGTTCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGc < 1:1624041/75‑1 (MQ=255) gAAATTTGTTCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGc > 2:1624041/1‑75 (MQ=255) gAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGc > 2:123309/1‑150 (MQ=255) gAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGATAAGCGCTGGGCGAAAttc < 2:2203886/150‑3 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTg > 2:962867/1‑138 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTg < 1:962867/138‑1 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACt > 2:2345819/1‑150 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACt < 1:2869894/150‑1 (MQ=255) gttGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGAAGCG‑TACACGTGCAGGTACGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCAAAATGCACTg > 2:776620/2‑150 (MQ=255) ttGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGt < 2:1552501/150‑1 (MQ=255) ttGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGt < 1:716931/150‑1 (MQ=255) tgctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAg < 1:847544/150‑1 (MQ=255) gctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAgg < 1:2785487/150‑1 (MQ=255) ctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGc < 2:472798/150‑1 (MQ=255) ccTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAg < 1:868826/145‑1 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTc > 2:2709736/1‑150 (MQ=255) tgCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCg < 1:1824394/127‑1 (MQ=255) cGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAg < 2:2414939/150‑1 (MQ=255) cGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAg < 1:1028587/150‑1 (MQ=255) gTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAGGAGGGCGGGGCAGGCTAGAACAGCACTTTCGCCACGTCAGCAAAGCGCTTGGCGAAAAGCACTGTGTGGCCGTCGCGCAGGt > 2:2481250/1‑150 (MQ=255) cTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt < 1:1153850/115‑1 (MQ=255) cTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt > 2:1153850/1‑115 (MQ=255) cTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGt > 1:1175594/1‑150 (MQ=255) cgcgAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCgg > 1:1129674/1‑150 (MQ=255) gcgAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAATAGGGCGGTGCAg < 2:2575299/73‑1 (MQ=255) gcgAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAg > 1:2575299/1‑73 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAgg > 2:2781146/1‑139 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg < 1:829489/150‑1 (MQ=255) aaGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttct < 1:2262759/150‑1 (MQ=255) gCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAg > 2:1154498/1‑132 (MQ=255) gCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 2:553935/1‑150 (MQ=38) cccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg > 1:1867339/1‑150 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCaaa < 1:2133876/94‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCaaa > 2:2133876/1‑94 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGt < 1:2011851/115‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGc < 2:1347640/120‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGc > 1:1347640/1‑120 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa > 1:1638389/1‑150 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa > 2:2285165/1‑150 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa > 1:666578/1‑150 (MQ=255) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTGCCCGCGAAGAGGGCCGTGCAGGCCAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAgg > 2:1987422/1‑131 (MQ=25) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGc > 2:3021860/1‑140 (MQ=25) cgcgCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa < 1:2285165/150‑1 (MQ=255) gcgcCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTc > 1:445298/1‑86 (MQ=255) gcgcCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTc < 2:445298/86‑1 (MQ=255) | GCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAG > NC_002947/1642157‑1642453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |