| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 5.9% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 5.9% | 1121.1 / 40.5 | 400 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (188/187); new base T (13/11); total (201/199) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01 | |||||||||||
Only 100 of 405 total aligned reads displayed.
GCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT > NC_002947/196910‑197181 | cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc < 2:1720675/150‑1 (MQ=32) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAACGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 2:1985467/150‑1 (MQ=17) ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 1:1362939/1‑150 (MQ=38) tGACAGTGACCCTGGCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg > 2:1528179/1‑150 (MQ=25) gACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:2247356/150‑1 (MQ=35) gACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:557284/150‑1 (MQ=35) accgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 2:2359343/147‑1 (MQ=11) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 2:2744039/150‑1 (MQ=35) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg < 2:115871/135‑1 (MQ=31) cgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCa > 2:439410/2‑150 (MQ=17) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 2:182625/1‑150 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 1:1307779/1‑150 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 1:2625533/1‑150 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTAACTATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 1:2335012/1‑150 (MQ=17) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt < 2:512598/137‑1 (MQ=33) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 2:2891534/130‑1 (MQ=33) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 1:2668363/150‑1 (MQ=32) cAAACCCTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc < 2:1464710/150‑1 (MQ=25) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGATAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc > 2:1836084/1‑150 (MQ=38) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg > 2:659439/1‑114 (MQ=31) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc > 1:1934162/1‑150 (MQ=35) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg > 2:1098036/1‑116 (MQ=32) ccATTACCGTTGAAGCGGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg < 1:2197069/150‑1 (MQ=37) ccATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 2:3059056/114‑1 (MQ=33) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 2:771314/123‑1 (MQ=33) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt < 2:2700605/150‑1 (MQ=39) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 1:466718/1‑150 (MQ=38) tACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTACAGACCCCGGCGAATGACGTATACAACAACG‑GTTGGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCACGGCTCa > 1:67597/1‑150 (MQ=255) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCAGACCCCGGc < 1:770193/144‑1 (MQ=255) ttGACGCCAGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGCATGACGACTACATCAACATGTTTG‑CGGTCACCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGATCAACTGACCCCGAATCCGACCCCGGCTCAGACCa < 1:1464959/150‑1 (MQ=11) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCcaca < 2:355841/101‑1 (MQ=11) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCcaca > 1:355841/1‑101 (MQ=11) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa > 2:1005714/1‑150 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:1271860/1‑112 (MQ=33) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc > 1:96082/1‑123 (MQ=33) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 2:748596/1‑138 (MQ=39) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa < 2:1752486/150‑1 (MQ=39) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 1:423977/1‑150 (MQ=38) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACAAAGGATTGGACCCCGGCTCAGACCACGATc > 1:1541560/1‑150 (MQ=11) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGATAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 2:2246763/150‑1 (MQ=255) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 1:1072095/150‑1 (MQ=38) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 1:1966303/150‑1 (MQ=37) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACg > 1:238922/1‑144 (MQ=38) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 2:847141/150‑1 (MQ=38) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 2:1260391/150‑1 (MQ=38) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAcc > 2:2451432/1‑149 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 1:2761100/149‑1 (MQ=37) cAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc > 1:991020/1‑122 (MQ=34) aaGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGAc > 1:303943/1‑150 (MQ=38) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg < 1:2070205/150‑1 (MQ=35) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg < 1:1590864/150‑1 (MQ=35) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 2:2160695/1‑150 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAGCAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 2:620887/150‑1 (MQ=25) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 1:743807/1‑150 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 1:1005714/150‑1 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGGCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 2:13648/1‑150 (MQ=25) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCAAAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 2:1502954/150‑1 (MQ=21) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCg > 1:1502569/1‑150 (MQ=35) gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGa > 2:2771829/1‑150 (MQ=35) gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGa > 1:1688536/1‑150 (MQ=35) ggCAGCGTCGATTTCCAGACCCCTGCGTATTACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGCAGCCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCGCAGACCACGATCAACGACTCGGTCGAt < 2:25350/150‑1 (MQ=11) cAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 1:18491/150‑1 (MQ=38) gCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 2:2983084/150‑1 (MQ=255) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg < 1:1809917/140‑1 (MQ=37) cGTCGATTCCCCACCCCCGGCGAATGCCGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac < 2:177741/150‑1 (MQ=14) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacc > 1:841841/1‑150 (MQ=40) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATAAACGACTCGGTCGATGccacc > 2:1579288/1‑150 (MQ=255) tCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacca < 1:2489059/150‑1 (MQ=40) ttCCAGACCCCGGGGAATGACGTCTACAACAACG‑GTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgcg > 2:284406/1‑150 (MQ=255) ttCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgcg > 1:1512258/1‑150 (MQ=255) cAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 1:1187489/1‑150 (MQ=40) aGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 2:2027331/80‑1 (MQ=35) aGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc > 2:2300882/1‑150 (MQ=255) aGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc > 1:309261/1‑150 (MQ=255) aGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATAAACGACTCGGTCGATGCCACCACCGCGAccc < 1:2863354/150‑1 (MQ=255) ccGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 1:954350/1‑84 (MQ=35) ccGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc < 2:954350/84‑1 (MQ=35) ccGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa > 1:1828127/1‑109 (MQ=38) cGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 1:1766746/150‑1 (MQ=40) aaTGACGTCTACAACAACG‑GTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 2:378554/150‑1 (MQ=25) aTGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc < 2:2095502/96‑1 (MQ=33) gACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 1:2938730/66‑1 (MQ=35) aCGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 2:1214774/1‑115 (MQ=32) gTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 2:1949278/150‑1 (MQ=38) tCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAAAGCCAAAGGACGGAATTGCGAGCAACTGACGCTGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 1:535248/1‑150 (MQ=11) cTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 2:1880880/81‑1 (MQ=35) caacaaCG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 2:2914269/100‑1 (MQ=34) aacaacG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGa > 1:62926/1‑110 (MQ=33) aacG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 1:2007117/150‑1 (MQ=38) aacG‑GTTCGACCGTCAGCGTCACCATCGAGAAAACCACAGATGCACACATTTTGGATCTAACGCCGAATCCTATCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa > 1:59658/1‑150 (MQ=11) acG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg > 1:506765/1‑150 (MQ=39) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 2:1307779/150‑1 (MQ=39) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCACGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 1:2104402/1‑150 (MQ=255) tCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 1:1495419/150‑1 (MQ=25) tCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 1:2279899/150‑1 (MQ=38) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCAAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 1:2839044/150‑1 (MQ=255) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 2:263264/1‑63 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:2738241/148‑1 (MQ=39) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 1:2738241/1‑148 (MQ=39) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 1:1098497/1‑150 (MQ=40) | GCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACG‑GTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT > NC_002947/196910‑197181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |