Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,628,430 G→T 5.4% G17C (GGC→TGC)  clpP → ATP‑dependent Clp protease proteolytic subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,628,4300GT 5.4% 394.2 / 5.1 123G17C (GGC→TGC) clpPATP‑dependent Clp protease proteolytic subunit
Reads supporting (aligned to +/- strand):  ref base G (54/62);  new base T (5/2);  total (59/64)
Fisher's exact test for biased strand distribution p-value = 2.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 129 total aligned reads displayed.

TGCTGAGTAACGGTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAACTGCTG  >  NC_002947/2628281‑2628576
                                                                                                                                                     |                                                                                                                                                  
   tgAGTAACGGTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAggcg                                                                                                                                                 <  2:2674490/150‑1 (MQ=255)
      gTAACGGTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGcc                                                                                                                                              >  1:1767505/1‑150 (MQ=255)
       tAACGGTCTTCTCTCGTAGGAAATCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCAAGCAGAGTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCt                                                                                                                                             <  1:532133/150‑1 (MQ=255)
       tAACGGTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCt                                                                                                                                             <  1:442478/150‑1 (MQ=255)
        aaCGGTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTg                                                                                                                                            <  1:2196041/150‑1 (MQ=255)
          cGGTCTTCTCTCGTAGGAAACCTCCACAAGCTAGCCGTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGATGTGTCAAGTAATTCTTCTATTCACCATAGCTCTGACATCCACGTCGCAGCCGGCTTGGt                                                                                                                                          >  2:1391082/1‑150 (MQ=255)
            gTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTcc                                                                                                                                        <  2:2057113/150‑1 (MQ=255)
             tcttctCTCGTAGGAAACCTCCACAAGCCAGCCTTTGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTccc                                                                                                                                       <  1:796464/150‑1 (MQ=255)
              cttctCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAg                                                                                                                                                    <  1:393604/136‑1 (MQ=255)
              cttctCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAg                                                                                                                                                    >  2:393604/1‑136 (MQ=255)
                tctctcGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCCCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGAt                                                                                                                                    >  2:3058444/1‑150 (MQ=255)
                 ctctcGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATg                                                                                                                                   <  1:1888666/150‑1 (MQ=255)
                 ctctcGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATg                                                                                                                                   >  1:1289762/1‑150 (MQ=255)
                    tcGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATg                                                                                                                                   >  1:1105594/1‑147 (MQ=255)
                    tcGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGtt                                                                                                                                >  1:2377069/1‑150 (MQ=255)
                       tAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATc                                                                                                                             <  1:1573526/150‑1 (MQ=255)
                         ggAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGa                                                                                                                           <  2:502846/150‑1 (MQ=255)
                          gAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAg                                                                                                                          <  1:1018406/150‑1 (MQ=255)
                            aaCCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCa                                                                                                                        <  2:467954/150‑1 (MQ=255)
                              ccTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGt                                                                                                                      <  2:2925304/150‑1 (MQ=255)
                                   acaAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGcc                                                                                                                 <  2:1926929/150‑1 (MQ=255)
                                     aaGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCg                                                                                                               >  1:1579303/1‑150 (MQ=255)
                                      agccagccTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGt                                                                                                              >  1:2370162/1‑150 (MQ=255)
                                        ccagccTTCGAGCGGGCTTGTGCGTGTTCATGCCATGACTATTTGGGAGTGTGCAGAGGACATGTCCCGGAATTCGTATATTCAGCAGAACGGTGACATCCAGGCCGCAGGTGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTgg                                                                                                            <  2:918314/150‑1 (MQ=255)
                                        ccagccTGCGAACTCGCTTGTGCGGATTCAAGTCAAGACGATTGGGGAGTGAGCGCAGAACATGACCCGCAAGTCGTATATTCAGCACAGCTCTGTCATCCAGGCCACGGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCgggg                                                                                                            <  2:2921708/150‑1 (MQ=255)
                                              ttCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAAcg                                                                                                      >  2:2873680/1‑150 (MQ=255)
                                                 gAGCGGGCTTGTGCGTACTCAAGCCAGGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACgcgc                                                                                                   <  2:2184053/150‑1 (MQ=255)
                                                  aGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCt                                                                                                  >  2:2174500/1‑150 (MQ=255)
                                                         ttGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATTCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCAGTGGCGAACGCGCTTACGACa                                                                                           >  2:184831/1‑150 (MQ=255)
                                                         ttGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGccc                                                                                                                >  1:1217482/1‑129 (MQ=255)
                                                         ttGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGccc                                                                                                                <  2:1217482/129‑1 (MQ=255)
                                                         ttGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTg                                                                                                             <  1:1496790/132‑1 (MQ=255)
                                                         ttGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACa                                                                                           >  2:1925812/1‑150 (MQ=255)
                                                         ttGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCAGTGGCGAACGCGCTTACGACa                                                                                           <  1:184831/150‑1 (MQ=255)
                                                            tgCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAg                                                                                                                          >  1:852868/1‑116 (MQ=255)
                                                              cGTATTCAAGCCATGACTATTTGGGAGTGAGCTCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTAc                                                                                      <  1:930333/150‑1 (MQ=255)
                                                               gTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACAACCAGGCCGCCTGCGGCCTggat                                                                                                                                         <  1:2256310/98‑3 (MQ=255)
                                                                     aaGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACCTCTACTTGCTcc                                                                               >  1:2351095/1‑150 (MQ=255)
                                                                         cATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGtt                                                                           <  1:2850733/150‑1 (MQ=255)
                                                                          aTGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTg                                                                                                                                            >  2:2905795/1‑84 (MQ=255)
                                                                          aTGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTg                                                                          >  2:458050/1‑150 (MQ=255)
                                                                            gccTATTTTGGTGTGAGCTCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGaa                                                                        <  2:220283/148‑1 (MQ=255)
                                                                            gACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGaa                                                                        <  1:2873680/150‑1 (MQ=255)
                                                                              cTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAgg                                                                      >  1:2549655/1‑150 (MQ=255)
                                                                               ggtgtGGGGGTGTGCGCAGGACATGTCCCGCAATTCATATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGa                                                                     >  2:899765/5‑150 (MQ=255)
                                                                                 tttGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGc                                                                   <  2:1289762/150‑1 (MQ=255)
                                                                                   tGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCgt                                                                 <  2:1579303/150‑1 (MQ=255)
                                                                                    gggAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCgtg                                                                <  2:2370162/150‑1 (MQ=255)
                                                                                      gAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAg                                                                       >  2:107955/1‑141 (MQ=255)
                                                                                      gAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAg                                                                       <  1:107955/141‑1 (MQ=255)
                                                                                       aGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGa                                                             <  2:2377069/150‑1 (MQ=255)
                                                                                         tGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATc                                                           >  2:1516494/1‑150 (MQ=255)
                                                                                              gcAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTCTCGAGCAGTCCGCCCGTCGAGAACGCGCTTACGACACCTACTCGCTTCTGCTGACGGAGCGAGTGCTCTTCCt                                                      >  2:82508/1‑150 (MQ=255)
                                                                                               cAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTg                                                     <  1:1924558/150‑1 (MQ=255)
                                                                                               cAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTg                                                     <  1:1925812/150‑1 (MQ=255)
                                                                                               cAGGACATGTCCCGAAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGTGCCTGTTGAAGGAGCGTGTGATCTTCCTg                                                     <  1:1391082/150‑1 (MQ=255)
                                                                                                  gACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTg                                                                                                                                            >  1:1794667/1‑60 (MQ=255)
                                                                                                  gACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTg                                                                                                                                            <  2:1794667/60‑1 (MQ=255)
                                                                                                  gACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGtt                                                  <  1:2186102/150‑1 (MQ=255)
                                                                                                   aCATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTg                                                 <  1:1185649/150‑1 (MQ=255)
                                                                                                        tCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGt                                                   >  2:2998242/1‑143 (MQ=255)
                                                                                                        tCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGt                                                   <  1:2998242/143‑1 (MQ=255)
                                                                                                        tCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCg                                            <  1:1477816/150‑1 (MQ=255)
                                                                                                         cccGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCgg                                           <  2:2350533/150‑1 (MQ=255)
                                                                                                          ccGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACa                                                                                           <  1:2488027/101‑1 (MQ=255)
                                                                                                          ccGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACa                                                                                           >  2:2488027/1‑101 (MQ=255)
                                                                                                          ccGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTTCGATGGGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGt                                          >  1:808019/1‑150 (MQ=255)
                                                                                                           cGCAATTCTTATATTCAGCAGAGCTCTTACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGccc                                             >  2:2298692/1‑146 (MQ=255)
                                                                                                           cGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTcgc                                                                                  <  1:2205273/109‑1 (MQ=255)
                                                                                                           cGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTcgc                                                                                  >  2:2205273/1‑109 (MQ=255)
                                                                                                           cGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTa                                         >  1:998955/1‑150 (MQ=255)
                                                                                                           cGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTa                                         >  1:1476477/1‑150 (MQ=255)
                                                                                                              aaTTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTagag                                      <  1:458050/150‑1 (MQ=255)
                                                                                                                   ttATATTCAGCAGAGCTCTGACATCCAGGCCGCAggcggc                                                                                                                                               >  1:3050062/1‑40 (MQ=255)
                                                                                                                   ttATATTCAGCAGAGCTCTGACATCCAGGCCGCAggcggc                                                                                                                                               <  2:3050062/40‑1 (MQ=255)
                                                                                                                   ttATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTa                                 >  1:2511153/1‑150 (MQ=255)
                                                                                                                        ttCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATGGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATgg                            >  2:1806484/1‑150 (MQ=255)
                                                                                                                        ttCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACa                                                                                           >  2:879967/1‑87 (MQ=255)
                                                                                                                        ttCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCgtg                                                                <  2:1601816/114‑1 (MQ=255)
                                                                                                                        ttCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATgg                            <  2:2549655/150‑1 (MQ=255)
                                                                                                                         tCAGCAGAGCCCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGc                           <  1:3058444/150‑1 (MQ=255)
                                                                                                                            gcagAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCaa                        <  2:1767505/150‑1 (MQ=255)
                                                                                                                            ccagAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAANGNGCGTGTGNTCTTCCAGNGTCTCCCGGTAGAGGACTACATGGCCan                        <  1:82508/149‑2 (MQ=255)
                                                                                                                             cagAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTagag                                      <  2:2611744/135‑1 (MQ=255)
                                                                                                                             cagAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTagag                                      >  1:2611744/1‑135 (MQ=255)
                                                                                                                                     tcgggaccAGGCCGCCTGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTcgtcgt               >  2:1755917/7‑150 (MQ=255)
                                                                                                                                     tGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTcgtcgt               >  1:652605/1‑150 (MQ=255)
                                                                                                                                         aTCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTAc                                <  2:400902/129‑1 (MQ=255)
                                                                                                                                         aTCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTAc                                >  1:400902/1‑129 (MQ=255)
                                                                                                                                         aTCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTgcg           >  1:828434/1‑150 (MQ=255)
                                                                                                                                          accAGGCCGCCTGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCgtg                                                                <  2:1369091/95‑1 (MQ=255)
                                                                                                                                          accAGGCCGCCTGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCgtg                                                                >  1:1369091/2‑96 (MQ=255)
                                                                                                                                           ccAGGCCGCCTGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCa         >  1:2562304/1‑150 (MQ=255)
                                                                                                                                           ccAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTAGCCCGGTAGAGGACTACATTGCCAACCTCGTCGTTGCGCa         >  2:2464317/1‑150 (MQ=255)
                                                                                                                                            cAGGCCCCCTGCGGCCTGGTCCCTAGGGTTCCCGAGCAGTGGGCGCGGGGCTAACTGGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGCGGACTACATGGCCAACCTCGTCGTTGCGCaa        >  2:507219/1‑150 (MQ=255)
                                                                                                                                             aGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAAc       >  2:2681664/1‑150 (MQ=255)
                                                                                                                                             aGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAAc       >  2:1924143/1‑150 (MQ=255)
                                                                                                                                                 cGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAActgct   >  2:1714503/1‑150 (MQ=255)
                                                                                                                                                  gCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAActgctg  >  1:1757990/1‑150 (MQ=255)
                                                                                                                                                  gCAGGCGGACTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGAAActgctg  <  1:1518280/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
TGCTGAGTAACGGTCTTCTCTCGTAGGAAACCTCCACAAGCCAGCCTTCGAGCTGGCTTGTGCGTATTCAAGCCATGACTATTTGGGAGTGAGCGCAGGACATGTCCCGCAATTCTTATATTCAGCAGAGCTCTGACATCCAGGCCGCAGGCGGCCTGGTCCCGATGGTTATCGAGCAGTCCGCCCGTGGCGAACGCGCTTACGACATCTACTCGCGCCTGTTGAAGGAGCGTGTGATCTTCCTGGTTGGCCCGGTAGAGGACTACATGGCCAACCTCGTCGTTGCGCAACTGCTG  >  NC_002947/2628281‑2628576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑