Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,076,138 C→A 5.3% intergenic (‑43/+31) PP_2685 ← / ← PP_2686 hypothetical protein/transglutaminase domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,076,1380CA 5.3% 412.6 / 6.2 126intergenic (‑43/+31)PP_2685/PP_2686hypothetical protein/transglutaminase domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (59/60);  new base A (3/4);  total (62/64)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01

Only 100 of 132 total aligned reads displayed.

GAACAACTTGGTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAGCTTCAGGTGACGC  >  NC_002947/3075991‑3076286
                                                                                                                                                   |                                                                                                                                                    
       ttGGTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCaa                                                                                                                                             <  1:2571877/150‑1 (MQ=255)
       ttGGTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCaa                                                                                                                                             <  1:2549992/150‑1 (MQ=255)
         ggTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGa                                                                                                                                           <  2:2366799/150‑1 (MQ=255)
          gTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCGCGAGTGCGGCAAGAc                                                                                                                                          <  1:1172836/150‑1 (MQ=255)
          gTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGAc                                                                                                                                          <  2:608599/150‑1 (MQ=255)
           tGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCGCGAGTGCGGCAAGAcc                                                                                                                                         <  1:2456995/150‑1 (MQ=255)
                gTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCCTGCCGCACTCGCGCGGCAAGACCGGTCt                                                                                                                                    >  1:973909/1‑150 (MQ=255)
                           gTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGaa                                                                                                                                 <  1:2830786/142‑1 (MQ=255)
                           gTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGaa                                                                                                                                 >  2:2830786/1‑142 (MQ=255)
                           gTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCt                                                                                                                         <  2:1738844/150‑1 (MQ=255)
                            tCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGGCCTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCACTCTg                                                                                                                        >  2:338015/1‑150 (MQ=255)
                             cGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGt                                                                                                                       <  1:2589131/150‑1 (MQ=255)
                              gATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTGGCCGCACTCGCGCGGCAAGACCGGTCTGGAGCCAGTCTGTc                                                                                                                      >  2:202375/1‑150 (MQ=255)
                                tGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGa                                                                                                                                           <  2:313417/127‑1 (MQ=255)
                                tGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGa                                                                                                                                           >  1:313417/1‑127 (MQ=255)
                                 gCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGt                                                                                                                           >  1:1498387/1‑142 (MQ=255)
                                 gCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGt                                                                                                                           <  2:1498387/142‑1 (MQ=255)
                                  ccGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTg                                                                                                                  >  1:2038376/1‑150 (MQ=255)
                                   cGGCATTAGTGCGTGATTCGCTGATAAAGACCAGCCCGTCCTACAAGTGCATGGCGACACAGCAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTgg                                                                                                                 <  2:582322/150‑1 (MQ=255)
                                   cGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGc                                                                                                                                               >  2:450245/1‑120 (MQ=255)
                                    ggCATTAGTGCGTGAGTCGCCGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGc                                                                                                                >  2:282171/1‑150 (MQ=255)
                                       aTTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGAt                                                                                                             <  2:2073123/150‑1 (MQ=255)
                                           gTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTcgcgc                                                                                                                                                  <  2:344912/109‑1 (MQ=255)
                                               gTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTc                                                                                                                          <  1:1791781/129‑1 (MQ=255)
                                                tGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGt                                                                                                                           >  1:1899899/1‑127 (MQ=255)
                                                tGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGt                                                                                                                           <  2:1899899/127‑1 (MQ=255)
                                                     cGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTg                                                                                               <  2:107805/150‑1 (MQ=255)
                                                       cTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTAATGGGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGc                                                                                             >  1:1616073/1‑150 (MQ=255)
                                                            gaAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCa                                                                                        <  1:2289716/150‑1 (MQ=255)
                                                               gACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGcc                                                                                                                              <  2:1814162/109‑1 (MQ=255)
                                                                aCAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCTTTTTCCCTTGTGTTGCGTGTGGAAGGGCTTCGCCGCACTCGTGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGa                                                                                    <  1:202375/150‑1 (MQ=255)
                                                                  aaGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCGCGAGTGCGGCAAGAc                                                                                                                                          >  2:616492/1‑94 (MQ=38)
                                                                  aaGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGAtt                                                                                  >  2:2630384/1‑150 (MQ=255)
                                                                    gCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGt                                                                                                                                      <  1:1244401/96‑1 (MQ=255)
                                                                     cccGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCgg                                                                               >  1:2242408/1‑150 (MQ=255)
                                                                     cccGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCgg                                                                               >  1:2910869/1‑150 (MQ=255)
                                                                       cGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGgcg                                                                             >  1:2975370/1‑150 (MQ=255)
                                                                        gTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTc                                                                                                                                     >  1:641785/1‑93 (MQ=255)
                                                                        gTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTc                                                                                                                                     <  2:641785/93‑1 (MQ=255)
                                                                        gTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCa                                                                                                                             >  2:2043936/1‑101 (MQ=255)
                                                                        gTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCa                                                                                                                             <  1:2043936/101‑1 (MQ=255)
                                                                        gTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGgcgc                                                                            <  2:2829192/150‑1 (MQ=255)
                                                                        gTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGcgcc                                                                           >  2:1417826/1‑150 (MQ=255)
                                                                           ctccAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGt                                                                                                                                      >  1:1387823/1‑89 (MQ=255)
                                                                           ctccAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGt                                                                                                                                      <  2:1387823/89‑1 (MQ=255)
                                                                               aGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTcgcg                                                                                                                                                   <  2:24141/72‑1 (MQ=255)
                                                                               aGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTcgcg                                                                                                                                                   >  1:24141/1‑72 (MQ=255)
                                                                                ggTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGcgccgccgccg                                                                    >  2:2237145/1‑150 (MQ=255)
                                                                                 gTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCaa                                                                                                                                             <  1:2805046/76‑1 (MQ=255)
                                                                                   gCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCgcgg                                                                 >  2:1285157/1‑150 (MQ=255)
                                                                                     aTGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCgcggcg                                                               >  1:45380/1‑150 (MQ=255)
                                                                                      tGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTc                                                                                                                      <  1:1066542/94‑1 (MQ=255)
                                                                                      tGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTc                                                                                                                      >  2:1066542/1‑94 (MQ=255)
                                                                                      tGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTgg                                                                                                                 <  1:2757824/99‑1 (MQ=255)
                                                                                      tGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTgg                                                                                                                 >  2:2757824/1‑99 (MQ=255)
                                                                                       ggCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTa                                                             <  1:759788/150‑1 (MQ=255)
                                                                                        gCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTAc                                                            >  1:1245613/1‑150 (MQ=255)
                                                                                           acacAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTc                                                                                                                                     >  2:2162527/1‑74 (MQ=255)
                                                                                           acacAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTc                                                                                                                                     <  1:2162527/74‑1 (MQ=255)
                                                                                                gTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGa                                                    >  2:1393121/1‑150 (MQ=255)
                                                                                                 tAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGc                                                                                                           >  1:2402588/1‑94 (MQ=255)
                                                                                                 tAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGc                                                                                                           <  2:2402588/94‑1 (MQ=255)
                                                                                                      cATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGggca                                             <  1:1417826/150‑1 (MQ=255)
                                                                                                        tGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGggcag                                            <  2:1661509/150‑1 (MQ=255)
                                                                                                        tGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGggcag                                            <  1:1285157/150‑1 (MQ=255)
                                                                                                             tttCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATc                                       >  1:441898/1‑150 (MQ=255)
                                                                                                               tCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCaa                                     <  2:2910869/150‑1 (MQ=255)
                                                                                                               tCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCaa                                     <  2:2242408/150‑1 (MQ=255)
                                                                                                                cccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAg                                    <  1:282171/150‑1 (MQ=255)
                                                                                                                cccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAg                                    <  1:1393121/150‑1 (MQ=255)
                                                                                                                 ccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGc                                                                                                                <  2:2998796/73‑1 (MQ=255)
                                                                                                                 ccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGc                                                                                                                >  1:2998796/1‑73 (MQ=255)
                                                                                                                 ccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAgg                                   <  2:2288592/150‑1 (MQ=255)
                                                                                                                 ccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAgg                                   >  2:1307126/1‑150 (MQ=255)
                                                                                                                 ccTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGAAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCACTGACCGGGCAGGCATCAAgg                                   <  1:607163/150‑1 (MQ=255)
                                                                                                                  cTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGggcagg                                           <  2:439526/141‑1 (MQ=255)
                                                                                                                  cTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGggcagg                                           >  1:439526/1‑141 (MQ=255)
                                                                                                                  cTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGt                                  >  2:1338062/1‑150 (MQ=255)
                                                                                                                      tgtTGCGTGTGGAAGGGTCTTGCCGCAATAGCGCGGCAAGAACGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTc                              <  2:2038376/150‑1 (MQ=255)
                                                                                                                       gtTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTcc                             >  2:2675974/1‑150 (MQ=255)
                                                                                                                         tGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAg                           >  2:447492/1‑150 (MQ=255)
                                                                                                                               tgGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGAGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCAc                     >  1:2954500/1‑150 (MQ=255)
                                                                                                                                 gAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGc                                                                                             >  1:1094497/1‑76 (MQ=255)
                                                                                                                                 gAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGc                                                                                             <  2:1094497/76‑1 (MQ=255)
                                                                                                                                   ccggTCTTGCCGCGCGAGTGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGcc                 >  1:538043/3‑150 (MQ=255)
                                                                                                                                   aGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTa                                 <  1:1727064/134‑1 (MQ=255)
                                                                                                                                   aGGGTCATGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTa                                 >  2:1727064/1‑134 (MQ=255)
                                                                                                                                      gTCTTGCCGCGCGAGTGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAGc              >  1:1144493/1‑150 (MQ=255)
                                                                                                                                      gTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAg               <  2:1857239/149‑1 (MQ=255)
                                                                                                                                      gTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAg               >  1:1857239/1‑149 (MQ=255)
                                                                                                                                        cTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAg                                    <  1:1524646/126‑1 (MQ=255)
                                                                                                                                        cTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAg                                    >  2:1524646/1‑126 (MQ=255)
                                                                                                                                         ttGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAgg                                   <  1:1936752/126‑1 (MQ=255)
                                                                                                                                           gCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGt                                                                                                       <  1:1543382/56‑1 (MQ=255)
                                                                                                                                           gCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGt                                                                                                       >  2:1543382/1‑56 (MQ=255)
                                                                                                                                           gCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAGCTTCAg         >  2:2116529/1‑150 (MQ=255)
                                                                                                                                                 cTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCg                   <  1:2180308/134‑1 (MQ=255)
                                                                                                                                                 cTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCg                   >  2:2180308/1‑134 (MQ=255)
                                                                                                                                                  tCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAGCTTCAGGTGACGc  >  1:867960/1‑150 (MQ=255)
                                                                                                                                                  tCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAGCTTCAGGTGACGc  <  1:368064/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GAACAACTTGGTGAACGTGGAGATCTGGTCGATGCCGGCATTAGTGCGTGAGTCGCTGATGAAGACAAGCCCGTCCTCCAGGTGCATGGCGACACAGTAAGTCATGCGGTTTCCCTTGTGTTGCGTGTGGAAGGGTCTTGCCGCACTCGCGCGGCAAGACCGGTCTGAAGCCAGTCTGTCACTGGCGATGCACGTGAACGCTGGCCTGCATCGATTCGGCGCCGCCGCCGCGGCGTACGCCCCTGACCGGGCAGGCATCAAGGTAGTCCAGGCCCACCGCCAGCTTCAGGTGACGC  >  NC_002947/3075991‑3076286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: