| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,397,589 | C→T | 5.0% | G9G (GGC→GGT) | PP_3002 → | shikimate dehydrogenase‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,397,589 | 0 | C | T | 5.0% | 298.1 / 3.5 | 100 | G9G (GGC→GGT) | PP_3002 | shikimate dehydrogenase‑like protein |
| Reads supporting (aligned to +/- strand): ref base C (47/47); new base T (2/3); total (49/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.74e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
ACCAAGTAGCCCCGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGAAGGGC > NC_002947/3397442‑3397736 | aCCAAGTAGCCCCGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGccg > 2:2666834/1‑150 (MQ=255) tAGCCCCGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAt < 2:1604331/150‑1 (MQ=255) gCCCCGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGccga < 1:418053/143‑1 (MQ=255) gCCCCGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCATGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGccga > 2:418053/1‑143 (MQ=255) ccccGGACCTT‑GCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AAc < 1:2098798/150‑1 (MQ=255) cccGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AAc > 2:827980/1‑150 (MQ=255) ccGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AAcc > 2:1726159/1‑150 (MQ=255) aCCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGTCGGCCGAT‑C‑actgcgta < 1:1047315/150‑8 (MQ=255) cTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCa > 1:1627787/1‑150 (MQ=255) cAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTccc > 2:2849894/1‑150 (MQ=255) cacaACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCGACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGc < 1:695186/150‑1 (MQ=255) acaACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCAACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCt > 1:2359863/1‑150 (MQ=255) aaCGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGa > 1:1863546/1‑150 (MQ=255) gCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGCGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTc > 1:830442/1‑150 (MQ=255) cGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCAt < 1:827980/150‑1 (MQ=255) cGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCAt < 2:457059/150‑1 (MQ=255) gAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTTTGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATg < 2:429359/150‑1 (MQ=255) aaGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATgg < 2:2780889/150‑1 (MQ=255) gTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGcc < 1:1901977/150‑1 (MQ=255) gTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGACCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGcc < 1:2262252/150‑1 (MQ=255) gccgccGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCAAGAACAGCGACAGCTACGCAGTGGTCGGCCGACCGATCC‑AATCA‑ACCAAGTCCTCGCTGATTGATGGCCTGt > 1:54171/1‑150 (MQ=255) gggCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCCAGTCCCCGCTGATTCATGGCCGGTTCGccc < 1:1632419/150‑1 (MQ=255) gcttggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTCCCCACGGAGATGCACGATCCGCGCCCGCTACCGTGTAGTCGTGC‑AGCGAA‑CTATCCGCACGGGGTCCCCGCTGATTCATGGCCTGTTCGCCCAg < 1:2363148/150‑1 (MQ=255) gcttggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGTAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAg < 1:2017106/150‑1 (MQ=255) gcttggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGCGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAg < 2:830442/150‑1 (MQ=255) ttggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGc < 1:38247/150‑1 (MQ=255) ggcttCAGCCCTGAAGAAATCACTGTCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa > 2:1895895/1‑150 (MQ=255) ggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa < 1:771246/150‑1 (MQ=255) ggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa < 1:2666834/150‑1 (MQ=255) ggcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCACTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa > 2:1343666/1‑150 (MQ=255) gcttCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACAGAT‑C‑CACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAg < 2:1965845/150‑1 (MQ=255) ccTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACcagc > 1:2552277/1‑150 (MQ=255) ccTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACcagc > 2:2852401/1‑150 (MQ=255) ccTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACcagc > 2:2727011/1‑150 (MQ=255) cTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCGAGGCTTTTCAGAATTAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACcagca < 2:1617961/150‑1 (MQ=255) tGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACcagcag > 1:2147834/1‑150 (MQ=255) gaaATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTgg > 1:2210532/1‑150 (MQ=255) aTCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGCTGCACGAGAAGCGGCCGCTACGCAGTGATGGGCCGACCGAT‑C‑AACCACACCACGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAAt > 2:455942/1‑150 (MQ=255) aCTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGGTTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACg > 2:743214/1‑150 (MQ=255) aCTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACg > 1:5/1‑150 (MQ=255) cTGCCTTGCAGGCGGATGGCGTTTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGCGCTAAACCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACgg < 1:1726159/150‑1 (MQ=255) cTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGGTTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACgg < 1:743214/150‑1 (MQ=255) cTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACgg < 1:1734821/150‑1 (MQ=255) cTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACgg < 1:2417418/150‑1 (MQ=255) tGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACggg > 2:2766363/1‑150 (MQ=255) tGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACggg > 2:1893484/1‑150 (MQ=255) tGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACggg > 1:1200989/1‑150 (MQ=255) gCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACgggg < 1:2849894/150‑1 (MQ=255) gCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACgggg < 2:2552277/150‑1 (MQ=255) ccTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa < 1:2537130/125‑1 (MQ=255) ccTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa > 2:2537130/1‑125 (MQ=255) cTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCt > 1:1910925/1‑150 (MQ=255) aGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACGCCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGa > 1:978447/1‑150 (MQ=255) ggCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGAGCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGaa < 2:2210532/150‑1 (MQ=255) gCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGGTCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAg < 2:54171/150‑1 (MQ=255) gCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAg > 1:1549209/1‑150 (MQ=255) gATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGGCCAGGCCATCAACCAGCAACTGTAAGACTGGGCGATCGAAGGCt > 2:1569403/1‑150 (MQ=255) tGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCg < 2:5/150‑1 (MQ=255) ggCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGc < 1:2852401/150‑1 (MQ=255) gCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCt > 1:1896163/1‑150 (MQ=255) gCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTAAGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTGTTGAAGGCTNGcg > 1:2774966/1‑149 (MQ=255) tgttgtTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑G‑AACCACACCAAGTACCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGga > 2:1462421/1‑150 (MQ=255) gttgttTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGgac < 1:1893484/150‑1 (MQ=255) ttgttTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGgacg > 1:1239794/1‑150 (MQ=255) ttACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACtt < 2:1200989/150‑1 (MQ=255) ccACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTGGCCCAGCCCCGCAACCCGCAGTTGGAATACGGGGCTATCGACGGCTCGCTGGAACACTTCGaa > 2:1175730/1‑150 (MQ=255) ccACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGaa > 2:290645/1‑150 (MQ=255) gagaTGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa > 1:150817/1‑92 (MQ=255) gagaTGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCa < 2:150817/92‑1 (MQ=255) gagaTGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCa < 1:2766363/150‑1 (MQ=255) gaTGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAgg < 2:2147834/150‑1 (MQ=255) gCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTAc > 1:410458/1‑150 (MQ=255) cACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGTTGGACGACTTCGAAGCCCAGGTACt > 1:1327508/1‑150 (MQ=255) gATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCa > 1:1115877/1‑150 (MQ=255) gATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCa > 2:2403430/1‑150 (MQ=255) gCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTc > 1:1796272/1‑150 (MQ=255) gCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTc < 1:2459748/150‑1 (MQ=255) aCCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCGGTTTCGTa < 2:2359863/150‑1 (MQ=255) cGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGc < 1:1569403/150‑1 (MQ=255) cTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAg < 1:2156910/104‑1 (MQ=255) cTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAg > 2:2156910/1‑104 (MQ=255) tACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGaa < 2:2180884/150‑1 (MQ=255) tACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGaa > 1:2299753/1‑150 (MQ=255) gCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTa < 2:2652052/142‑1 (MQ=255) gCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTa > 1:2652052/1‑142 (MQ=255) gCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGaa > 2:1957843/1‑147 (MQ=255) gCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGaa < 1:1957843/147‑1 (MQ=255) gCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGCATCGTAAAGGCTCGCTGGACGACTTCGAAGCGGAGGTACTGCAGTTTCGTAGCGAAGGc > 1:1571936/1‑150 (MQ=255) gttGATCGGTCGGCCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTc < 1:2277381/135‑1 (MQ=255) gttGATCGGTCGGCCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTc > 2:2277381/3‑137 (MQ=255) aGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCgg > 1:1046725/1‑150 (MQ=255) aGTGATCGGCCGACCGAT‑C‑AACCACAACAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTAGAAGCCCAGGTACTGGAGTTTCGTAGCGAATGcag > 2:1067597/1‑148 (MQ=255) tGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGa > 1:2852184/1‑150 (MQ=255) attggCCGACCGAT‑C‑AACCACACCAAGTCCACGCAGATTCATGGCCTGTTCGCGCAGGCCAGGCATCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTAGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGAAg > 1:2700315/4‑150 (MQ=255) aTCGGTCGGCCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCt > 1:946596/1‑47 (MQ=255) aTCGGTCGGCCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCt < 2:946596/47‑1 (MQ=255) aTCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGAAg < 1:1440665/150‑1 (MQ=255) tCGGCCGACCGAT‑C‑AACCACGCCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGAAgg < 2:978447/150‑1 (MQ=255) tCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGAAgg < 1:1343666/150‑1 (MQ=255) ggCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCACCCAGCAGCTGGAATACGGGGCTATCGACGGATCGCTGGACGACTTCGAAGCCCAGGCACTGCAGTTTCGTAGCGAAGGCGGGAAGGGc < 1:1175730/150‑1 (MQ=255) | ACCAAGTAGCCCCGGACCTTGGCCAGCACAACGCCGAAGTGGCCGCCGGGCTTGGCTTCAGCCCTGAAGAAATCACTGCCTTGCAGGCGGATGGCGTGTTGTTTACCCACGGAGATGCACGATGAGCGACCGCTACGCAGTGATCGGCCGACCGAT‑C‑AACCACACCAAGTCCCCGCTGATTCATGGCCTGTTCGCCCAGGCCAGCAACCAGCAGCTGGAATACGGGGCTATCGAAGGCTCGCTGGACGACTTCGAAGCCCAGGTACTGCAGTTTCGTAGCGAAGGCGGGAAGGGC > NC_002947/3397442‑3397736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |