| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,453,506 | C→T | 5.9% | intergenic (‑17/+96) | PP_3069 ← / ← ppiC‑I | outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,453,506 | 0 | C | T | 5.9% | 336.7 / 6.3 | 114 | intergenic (‑17/+96) | PP_3069/ppiC‑I | outer membrane autotransporter/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base C (58/48); new base T (4/3); total (62/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
AGGTGTAGGTGTCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTGATCG > NC_002947/3453360‑3453654 | aggtgtaggtgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGca > 1:2417311/1‑150 (MQ=255) gtgtaggtgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGcacc > 1:853253/1‑150 (MQ=255) gtaggtgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGcaccac < 1:3045566/150‑1 (MQ=255) gtaggtgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGcaccac > 2:1258478/1‑150 (MQ=255) gtgtCGTTCCCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgt < 2:151468/150‑1 (MQ=255) gtgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgt > 2:2018321/1‑150 (MQ=255) tgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgtg < 2:1853657/150‑1 (MQ=255) tgtCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgtg > 2:1913338/1‑150 (MQ=255) gtCGATACCCGGGCTGGGGGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGATCGAACCCAGAGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgtgg < 2:835917/150‑1 (MQ=255) ttACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgtggtg > 2:2965352/1‑148 (MQ=255) aCCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGcaca > 2:1977069/1‑150 (MQ=255) aCCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGcaca < 1:1947917/150‑1 (MQ=255) cccGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAg < 1:1977069/150‑1 (MQ=255) ccgggccgggTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAAACCAGGGTCAGCATCAGGCGTAGACGCGTCAGGAAAACCTCCATTCACCATTGGTT‑CCTTCGCACCACTCGTGGGGCACAgg > 2:2462498/1‑150 (MQ=255) cgggccgggTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAggg < 2:2417311/150‑1 (MQ=255) ggccgggTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAACCCTGTGCACCACGCGTGGTGCGCAggtt < 2:685714/150‑3 (MQ=255) gccgggTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGTGCACCACGCGTGGTGCGCAGGtttc < 2:2285635/150‑2 (MQ=255) gTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgt < 1:827496/131‑1 (MQ=255) gTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCgt > 2:827496/1‑131 (MQ=255) agaAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGtt > 1:760450/1‑150 (MQ=255) gaAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGca > 1:1333276/1‑133 (MQ=255) gaAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGca < 2:1333276/133‑1 (MQ=255) gaAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTg < 1:2542324/150‑1 (MQ=255) atggTACAAGGCGCGTGTGCAGCGGGCGGGGCCAAGCATAGCAGCGGGGGCGAACCCGGGGCCAGCCACAGGCGTACAGGACACCTGACAACCTCCAGTCACCAGGGAAA‑CCTGCGCACCACACGTGGTCCACGGGGTTACCGGGGTTgg > 2:580764/3‑149 (MQ=255) aaGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGt > 2:398932/1‑150 (MQ=255) tACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCggg > 2:572728/1‑141 (MQ=255) tACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCggg < 1:572728/141‑1 (MQ=255) tACAAGCCGCGTGTGCAGCGGGCGAGCCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATAAGGAAAACCTCCATTCGCCACCGAAA‑CCGCGGGTCCAGGCGTGGTGCACAGGGTTACCGGGGTTGTATag < 1:1303768/150‑1 (MQ=255) aCAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATaga > 2:2210436/1‑150 (MQ=255) aaGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGtt > 2:1384300/1‑141 (MQ=255) aaGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGtt < 1:1384300/141‑1 (MQ=255) aGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAgagga < 1:2210436/150‑1 (MQ=255) gcgTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGc > 2:1101133/1‑150 (MQ=255) gcgTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGc < 1:1101133/150‑1 (MQ=255) tgtgCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTc < 1:2018321/150‑1 (MQ=255) gtgCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCa < 1:2260630/150‑1 (MQ=255) aGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCaaaga > 1:431951/1‑146 (MQ=255) gCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGTAAC‑CCTGTGCACCACGCGTGGTGCACAGGGTTAACACGGTTGTATAGAGGAGTGCGTCACGAcc > 1:2979/1‑150 (MQ=255) gCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACaa > 2:2982909/1‑150 (MQ=255) cGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAAc < 1:908352/150‑1 (MQ=255) gAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGcaccac < 2:697823/95‑1 (MQ=255) gAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGcaccac > 1:697823/1‑95 (MQ=255) gAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACt < 2:1603562/150‑1 (MQ=255) cATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCaa > 1:2740655/1‑150 (MQ=255) cccAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAAt < 1:398932/150‑1 (MQ=255) cagcagCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGTGCACCACGCGTGGTGCGCAGGtttc > 2:818137/1‑101 (MQ=39) cagcagCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGTGCACCACGCGTGGTGCGCAGGtttc < 1:818137/102‑2 (MQ=38) cagcagCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTgg < 2:144495/141‑1 (MQ=255) cagcagCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTgg > 1:144495/1‑141 (MQ=255) agcagcGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTc < 1:2456475/150‑1 (MQ=255) agcGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAgg > 1:114496/1‑150 (MQ=255) ggAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATg > 2:1973249/1‑141 (MQ=255) ggAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATg < 1:1973249/141‑1 (MQ=255) gCGAACCCAGGGTCGGCATCAGGCGTAGACGCATCATGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGt < 1:376750/89‑1 (MQ=255) gCGAACCCAGGGTCGGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGt > 2:376750/1‑89 (MQ=255) cGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAg < 1:1463577/150‑1 (MQ=255) ccAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGtt < 1:1401180/93‑1 (MQ=255) ccAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGtt > 2:1401180/1‑93 (MQ=255) ccAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATaga < 1:1954371/100‑1 (MQ=255) ccAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATaga > 2:1954371/1‑100 (MQ=255) ccAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTa > 1:243555/1‑150 (MQ=255) aGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAAATGGCAAAAATGTCAGACGGCGAAGGTCTAgc > 2:1710109/1‑150 (MQ=255) aGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTa < 2:483242/150‑1 (MQ=255) aGCATCAGGCGTAGACGAATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCAGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTa > 1:993950/1‑150 (MQ=255) gCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGcaca < 2:1586224/70‑1 (MQ=255) gCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGcaca > 1:1586224/1‑70 (MQ=255) aGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCATCACCTCCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTcgcg < 1:1913338/150‑1 (MQ=255) ggCGTAGACGCCTCAGGACAACCCCCATTCACCAAGGCAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCgg < 1:580764/150‑1 (MQ=255) gCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCAGAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAGTGTCAGGTGTCAAAGGGCTAGCGCGTTAGTCGCGGt > 2:781477/1‑150 (MQ=255) gCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGt < 1:63150/150‑1 (MQ=255) gCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAg < 2:1718000/121‑1 (MQ=255) gCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAg > 1:1718000/1‑121 (MQ=255) gCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGtt < 1:1518746/150‑1 (MQ=255) gCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGtt < 2:243555/150‑1 (MQ=255) aTCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTTCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTg > 2:433461/1‑150 (MQ=255) cTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAggtggt > 1:63816/1‑150 (MQ=255) cATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAggtggt < 1:2236992/147‑1 (MQ=255) cATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAggtggt > 2:2236992/1‑147 (MQ=255) aTTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGAc > 2:1835964/1‑74 (MQ=255) aTTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGAc < 1:1835964/74‑1 (MQ=255) aTTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGcc > 2:1636475/1‑150 (MQ=255) ccAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAAtt > 1:1090886/1‑150 (MQ=255) ccAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAAtt > 1:2313354/1‑150 (MQ=255) cAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTATAAc < 2:41806/124‑1 (MQ=255) cAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAAc > 1:41806/1‑124 (MQ=255) aGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTa > 2:1030065/1‑119 (MQ=255) aGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTa < 1:1030065/119‑1 (MQ=255) gggAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGc > 1:2877540/1‑150 (MQ=255) gggAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGc > 2:1992668/1‑150 (MQ=255) gAAA‑CCTGCGCCCCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGCGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGctc < 1:2926668/150‑1 (MQ=255) a‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTg > 1:1351216/1‑150 (MQ=255) ccTGTGCACCACGCGTGGTGCGCAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTGa > 1:586153/1‑150 (MQ=255) ccTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTa > 1:2016665/1‑112 (MQ=255) ccTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTa < 2:2016665/112‑1 (MQ=255) ccTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGTTAGCCGAATTTGCTCTTGa < 2:2677474/150‑1 (MQ=255) ccTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGATCTTGa > 1:2351193/1‑150 (MQ=255) ccTGCGCACCAAGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTTGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTGa < 2:133179/150‑1 (MQ=255) cTGTGCACCACGCGTGGTGCGCAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTg > 2:2578341/1‑120 (MQ=255) tGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTGATc > 2:2313866/1‑150 (MQ=255) gcgcACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTGATCg > 2:1748876/1‑150 (MQ=255) | AGGTGTAGGTGTCGTTACCCGGGCCGGGTGAGAAGGTACAAGCCGCGTGTGCAGCGGGCGAGGCCATGCCCAGCAGCGGGAGCGAACCCAGGGTCAGCATCAGGCGTAGACGCATCAGGAAAACCTCCATTCACCAGGGAAA‑CCTGCGCACCACGCGTGGTGCACAGGGTTACCGGGGTTGTATAGAGGAGTGCGTCACGACCACAACTGGCAAAAATGTCAGGTGGCAAAGGGCTAGCGCGTTAGTCGCGGTAGAACGTTTGCACCAGGTGGTAGCCGAATTTGCTCTTGATCG > NC_002947/3453360‑3453654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |