| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,778,612 | C→T | 5.7% | V541V (GTC→GTT) | PP_3340 → | TonB‑dependent receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,778,612 | 0 | C | T | 5.7% | 362.3 / 8.3 | 123 | V541V (GTC→GTT) | PP_3340 | TonB‑dependent receptor |
| Reads supporting (aligned to +/- strand): ref base C (46/69); new base T (3/4); total (50/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.35e-01 | |||||||||||
Only 100 of 126 total aligned reads displayed.
GTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGAACACCGGCATCAGC > NC_002947/3778463‑3778759 | gTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTc > 2:2237032/1‑150 (MQ=255) aaGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGCGCCGTCGCCCGAACGACCCCAGAGGCGCGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAAc < 2:1887178/150‑1 (MQ=255) aaGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAAc < 1:991726/150‑1 (MQ=255) aaGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGGCAAc < 2:2661602/150‑1 (MQ=255) gTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCTCTGGGGCTATGACCTGCCGGTACACCt > 2:503800/1‑150 (MQ=255) gTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCt < 2:2404492/150‑1 (MQ=255) tCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGc < 1:826432/150‑1 (MQ=255) tCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGc < 2:42016/150‑1 (MQ=255) aCCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTTGACCTGCag < 1:1843825/150‑2 (MQ=255) aCCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCAc > 1:2791054/1‑150 (MQ=255) cccGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACGCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCAccc > 1:2184198/1‑150 (MQ=255) cccGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCAccc < 2:2262138/150‑1 (MQ=255) ccGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTTGGGCTATGACCTGCAGGTCAACCTGCACCCg > 1:788879/1‑150 (MQ=255) ggCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTTGACCTGCaggtcat < 2:2883335/150‑7 (MQ=255) ggCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGa < 1:2813728/150‑1 (MQ=255) aGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGCCCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGacgaa < 2:1012530/150‑1 (MQ=255) gCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGacgaac < 1:2237032/150‑1 (MQ=255) gCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGGCAACCTGCACCCGGacgaac < 2:1817825/150‑1 (MQ=255) cTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGacgaacg > 2:795845/1‑150 (MQ=255) gTCGATGGCCGCGTGGCCTATTGGCGGCAGGACGCCTCTGGCGAAGTGAGCCGTCGACTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAAcc > 1:375349/1‑150 (MQ=255) cGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGa < 2:2030421/150‑1 (MQ=255) gATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAg < 2:137004/150‑1 (MQ=255) aTGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAgg < 1:503800/150‑1 (MQ=255) tGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGTCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGgt < 1:2311111/150‑1 (MQ=255) ccGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGAcgaacgaa < 1:2796248/140‑1 (MQ=255) ccGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGAcgaacgaa > 2:2796248/1‑140 (MQ=255) ggCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCGTTTTGTTTTTTTTGTGGCGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTc < 1:2223416/150‑1 (MQ=255) ggCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTc < 2:1857439/150‑1 (MQ=255) cTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGc < 2:1890998/116‑1 (MQ=255) cTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGc > 1:1890998/1‑116 (MQ=255) ttGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTc < 2:871852/150‑1 (MQ=255) gCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGTCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTg > 2:1307568/1‑150 (MQ=255) tCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCa > 2:2772569/1‑150 (MQ=255) ggACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTgg > 2:10031/1‑145 (MQ=255) ggACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTgg < 1:10031/145‑1 (MQ=255) ctctGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTgg < 2:2476899/139‑1 (MQ=255) ctctGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTgg > 1:2476899/1‑139 (MQ=255) ctctGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCaa > 1:1004971/1‑150 (MQ=255) tctGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAg > 2:1655186/1‑150 (MQ=255) ctGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACAAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGa < 1:1481292/150‑1 (MQ=255) ctGGCAAAGTTATCCGGCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACGCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGa < 2:2184198/150‑1 (MQ=255) tGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGgtgt > 2:1771009/1‑119 (MQ=255) gAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTTGACCTGCag > 2:2349598/1‑92 (MQ=255) gAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTTGACCTGCag < 1:2349598/93‑2 (MQ=255) gAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCtt < 1:121329/150‑1 (MQ=255) gTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAg < 1:795845/150‑1 (MQ=255) ccGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGgtgt < 1:1106171/107‑1 (MQ=255) ccGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGgtgt > 2:1106171/1‑107 (MQ=255) gTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCATGGCAGTACTCCAAGATCCTTGAGCCcagca < 1:1070962/150‑1 (MQ=255) tCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAg > 1:779479/1‑124 (MQ=255) tCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAg < 2:779479/124‑1 (MQ=255) tGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGgtgt < 2:3047696/99‑1 (MQ=255) tGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGgtgt > 1:3047696/1‑99 (MQ=255) tGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGa < 1:1669300/136‑1 (MQ=255) tGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGa > 2:1669300/1‑136 (MQ=255) tGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGt < 2:1832422/150‑1 (MQ=255) gAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGTCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGtt < 1:1307568/150‑1 (MQ=255) aaCGACCCCAGCGGCGAGTCGGACAACGTCGGCGCAATACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTg > 1:2254036/1‑150 (MQ=255) ccAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGa < 1:2341422/73‑1 (MQ=255) ccAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGa > 2:2341422/1‑73 (MQ=255) cgAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAgg < 2:296695/150‑1 (MQ=255) aGTCGGACAACGTCGGCGAAACACGCCGCTGGGCCCTTTACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGcc < 2:2254036/150‑1 (MQ=255) tCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAg < 2:294106/150‑1 (MQ=255) gACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGaa > 1:705904/1‑150 (MQ=255) aCAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGcgcg > 2:2276728/1‑125 (MQ=255) cAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAAt < 1:1655186/150‑1 (MQ=255) aCGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCg < 2:375349/150‑1 (MQ=255) aCGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCg > 2:1390366/1‑150 (MQ=255) cGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGa < 1:354346/150‑1 (MQ=255) gTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCAGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTAATCCAAGATGCTTGAGACCAGCAGAGCGTTGCTAGGCAGCAAAGGCCAGGAAATCTAt > 2:1493056/1‑150 (MQ=255) ggCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCAc > 1:683870/1‑150 (MQ=255) cGAAACACGCCCCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCCCGTAGCAAAGGCCAGGAAATCTATCACGt < 1:1493056/150‑1 (MQ=255) gAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCtt < 2:1797091/99‑1 (MQ=255) gAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCtt > 1:1797091/1‑99 (MQ=255) acGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCcaca < 2:1004971/150‑1 (MQ=255) cgccgcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCacac < 2:705904/150‑1 (MQ=255) gccgcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATc < 2:269007/134‑1 (MQ=255) gccgcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATc > 1:269007/1‑134 (MQ=255) cgcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCa > 2:3000787/1‑74 (MQ=255) cgcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGaaa < 1:900019/130‑1 (MQ=255) cgcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGCGCCCCAAGATCCATGAATCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCAt < 1:1910268/150‑1 (MQ=255) gcTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGTCTCGCTCACCGGCGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATc > 2:1616930/1‑150 (MQ=255) cTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCt < 1:1849523/150‑1 (MQ=255) ggCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTgg < 1:1390366/150‑1 (MQ=255) cTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTTCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCCAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGaa < 1:2928042/150‑1 (MQ=255) cTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTgg > 1:2243483/1‑148 (MQ=255) tATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGAac > 1:2804302/1‑150 (MQ=255) tGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGAacac > 1:256122/1‑150 (MQ=255) gggtGCAGGTTGACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCa < 2:827660/95‑1 (MQ=255) aCCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAACGAAGGACGTGCCACACCATCTGTGGAACACCg < 1:1616930/150‑1 (MQ=255) cTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCa < 2:55342/59‑1 (MQ=255) cTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCa > 1:55342/1‑59 (MQ=255) cTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGAt > 1:1852647/1‑120 (MQ=255) cTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGAt < 2:1852647/120‑1 (MQ=255) gCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGCGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGc > 1:2168414/1‑125 (MQ=255) gCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGCGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGc < 2:2168414/125‑1 (MQ=255) ggTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGAGCACCGGCATCAg > 2:781114/1‑150 (MQ=255) gTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGAACACCGGCATCAGc > 2:170136/1‑150 (MQ=255) tCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGAGTTGCCAGGCAGCAAAgg > 1:53991/1‑100 (MQ=255) cAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACg < 2:1488461/116‑1 (MQ=255) | GTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGTGGAACACCGGCATCAGC > NC_002947/3778463‑3778759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |