| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,984,087 | A→C | 5.3% | intergenic (+37/+153) | ilvE → / ← PP_3512 | branched‑chain‑amino acid aminotransferase/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,984,087 | 0 | A | C | 5.3% | 302.0 / 5.2 | 104 | intergenic (+37/+153) | ilvE/PP_3512 | branched‑chain‑amino acid aminotransferase/membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (51/47); new base C (3/3); total (54/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CACGACCTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCCGCGCCGGG > NC_002947/3983940‑3984231 | cACGACCTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGACACGCATCAGCTGTATGAAAACGGGGTGGGCCAGCAATg < 2:3050512/150‑1 (MQ=255) aCGACCTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATgg < 2:1821200/150‑1 (MQ=255) aCCTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCAt > 1:110492/1‑150 (MQ=255) aCCTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCAt < 2:1978802/150‑1 (MQ=255) ccTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGAAGCGGCAGGCTGGATCGTCAAGGTCGCATGAAAAGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATg > 1:1452680/1‑150 (MQ=255) ggAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGTGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGccc > 2:1776220/1‑150 (MQ=255) ggAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGccc > 2:2822811/1‑150 (MQ=255) ggAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGccc > 2:1669948/1‑150 (MQ=255) ggTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGtttt < 2:1696182/150‑1 (MQ=255) gTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATg > 2:1504004/1‑135 (MQ=255) gTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATg < 1:1504004/135‑1 (MQ=255) cGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTc < 1:2822811/150‑1 (MQ=255) ggCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCa > 1:485328/1‑150 (MQ=255) gCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTcct > 1:120816/1‑148 (MQ=255) gCCCGGTTACCCAGAAGATATACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAt > 2:2574776/1‑150 (MQ=255) ccGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAtgt < 1:2911982/150‑1 (MQ=255) ggTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATgtgt < 1:1776220/150‑1 (MQ=255) gTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGtt < 1:2574776/150‑1 (MQ=255) ccAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATGAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCTCCGTTTTTTCATGTGTTTataa > 2:2552926/1‑147 (MQ=255) ccAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCATTGCTGGCATGCCCCGtt < 2:2159913/133‑1 (MQ=39) ccAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCATTGCTGGCATGCCCCGtt > 1:2159913/1‑133 (MQ=39) ccAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTacac > 1:1020642/1‑150 (MQ=255) ccAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATCCCCCGTTTTTTCATGTGtttcccc > 2:137716/1‑146 (MQ=255) cAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACg > 2:654253/1‑150 (MQ=255) gAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGc < 1:1669948/150‑1 (MQ=255) gAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGc < 2:1466136/150‑1 (MQ=255) aGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGccc > 1:1365039/1‑150 (MQ=255) ctACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTc < 2:120816/150‑1 (MQ=255) cTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCg‑‑g < 2:1020642/150‑1 (MQ=255) gatcGGTATCCAGAGAGAAGATGTAGAGGCACCGGCAGGCTGTATCGTCAAGGTCGGCTGAAACGCATCAGCTGTATGAAAAAGGGGAATGCCAGCAATGGCATGCTGCGTGTTTTGATGTGTTTATAGGGCGCCGTCGTAGGAGCG‑‑GGt > 2:1573587/4‑150 (MQ=255) gTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTAcc < 2:2793000/150‑1 (MQ=255) tATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTAccc < 1:654253/150‑1 (MQ=255) tCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCcgc < 1:173936/150‑1 (MQ=255) ccAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCg‑‑g < 2:1249069/139‑1 (MQ=255) ccAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCg‑‑g > 1:1249069/1‑139 (MQ=255) cAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGc > 1:1392580/1‑92 (MQ=255) cAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGc < 2:1392580/92‑1 (MQ=255) agagCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGaa < 2:2490199/150‑1 (MQ=255) agagCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGaa > 1:1458936/1‑150 (MQ=255) agagCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGaa < 1:70787/150‑1 (MQ=255) ggcgATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGc < 2:110492/150‑1 (MQ=255) cgATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCca < 2:1452680/150‑1 (MQ=255) tttAGAGGCACCGGCAGGCTGGACCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCacac < 1:819622/148‑1 (MQ=255) gagGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCgc > 2:3058867/1‑150 (MQ=255) gagGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTCTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCgc > 2:343557/1‑150 (MQ=255) gCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAt < 1:853988/91‑1 (MQ=255) aCCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCca > 2:3047644/1‑138 (MQ=255) aCCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCca < 1:3047644/138‑1 (MQ=255) aCCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCgccagcc > 2:397103/1‑150 (MQ=255) cGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGc > 1:482502/1‑134 (MQ=255) cGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGc < 2:482502/134‑1 (MQ=255) cGGCAGGCTGGATCGTCAAGGTCGCCGGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCACGGGCATGCCCCGTTTTTTCATGTGTTCACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCAAACCCGCCAGCCaa < 2:537969/150‑1 (MQ=255) gCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAtg < 2:2232961/86‑1 (MQ=255) gCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAtg > 1:2232961/1‑86 (MQ=255) gCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGt > 2:2131274/1‑116 (MQ=255) gCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGt < 1:2131274/116‑1 (MQ=255) gCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGc > 1:1538307/1‑150 (MQ=255) tCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTgg < 1:1698429/145‑1 (MQ=255) tCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTgg > 2:1698429/1‑145 (MQ=255) gTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAtgt < 1:1515753/69‑1 (MQ=255) gTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCAtgt > 2:1515753/1‑69 (MQ=255) gTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCg > 2:853954/1‑150 (MQ=255) tCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCg‑‑g > 2:1927699/1‑95 (MQ=255) tCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCg‑‑g < 1:1927699/95‑1 (MQ=255) ccTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGc > 1:2938338/1‑110 (MQ=255) ccTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGc < 2:2938338/110‑1 (MQ=255) ccTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGt < 2:485328/150‑1 (MQ=255) ccTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGt > 2:2390775/1‑150 (MQ=255) aaaCGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATgtgt > 1:1959882/1‑63 (MQ=255) aaaCGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATgtgt < 2:1959882/63‑1 (MQ=255) aaaCGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGt > 1:800713/1‑150 (MQ=255) cGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCa < 2:800713/150‑1 (MQ=255) cATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAgg > 1:537358/1‑100 (MQ=255) cATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAgg < 2:537358/100‑1 (MQ=255) aTCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGcc < 1:397103/150‑1 (MQ=255) aTCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCAAGCGCCGGGTGTTGATGTGTTTACACGGCCCCCTCGTCCGACCGCAGCCATGGCCGTCAAAAG‑‑CACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTTTCAGTGCAGcc > 1:701601/1‑150 (MQ=255) tCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCg > 2:2211368/1‑150 (MQ=255) atgaaaaaaCGGGGCATGCCATTGCTGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGga > 1:627785/6‑121 (MQ=37) atgaaaaaaCGGGGCATGCCATTGCTGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGga < 2:627785/116‑1 (MQ=37) tATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGc < 2:2467614/150‑1 (MQ=255) aaaaaaCGGGGCATGCCATTGCTGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCgg > 2:2408724/3‑150 (MQ=39) gAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGc > 1:1434848/1‑111 (MQ=255) gAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGc < 2:1434848/111‑1 (MQ=255) gAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCggg > 2:1474579/1‑150 (MQ=255) gAAAACGGGGCATGCCAGCAATCGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCCAAAAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCggg < 1:2552926/150‑1 (MQ=255) aaaaCGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGc > 2:1464936/1‑150 (MQ=255) ggggCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCgg < 2:2380362/143‑1 (MQ=255) ggggCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCgg > 1:2380362/1‑143 (MQ=255) gggCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGt > 2:790075/1‑122 (MQ=255) gggCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGt < 1:790075/122‑1 (MQ=255) gggCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGccc < 1:583884/150‑1 (MQ=255) ggCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCcg > 2:2824727/1‑150 (MQ=255) gCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCcgc < 2:1538307/150‑1 (MQ=255) aTGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCCgcgc > 1:2691313/1‑150 (MQ=255) aTGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCCgcgc > 1:1239697/1‑150 (MQ=255) gCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCgg > 1:2309384/1‑136 (MQ=255) ccAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAg > 2:1112513/1‑118 (MQ=255) ccAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAg < 1:1112513/118‑1 (MQ=255) ccAGCAATGGCATGCCCCGTCTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCCGCGCCgg < 1:343557/150‑1 (MQ=255) cAGCAATGGCATGCCCCGTTTTTTTTTTTTTTTTTACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGTGTATAGGCCATACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCTGGCAAGCCCGCGCCggg > 2:1828216/1‑150 (MQ=255) | CACGACCTGGAAAAGGTCGGCCCGGTTACCCAGAAGCTCTACAACGAGCTGACCGGTATCCAGAGCGGCGATGTAGAGGCACCGGCAGGCTGGATCGTCAAGGTCGCCTGAAACGCATCAGCTGTATGAAAACGGGGCATGCCAGCAATGGCATGCCCCGTTTTTTCATGTGTTTACACGGCCCCCTCGTAGGAGCG‑‑GGTTTACCCGCGAATAGGCCACACCCGCCAGCCAATAATGCCTGGGAGATCACCGTTGTCAGTGCAGCCGCATTAGCGGGCAAGCCCGCGCCGGG > NC_002947/3983940‑3984231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |