BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	4,241,038	C→G	5.1%	M235I (ATG→ATC)	PP_3718 ←	aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	4,241,038	0	C	G	5.1%	379.8 / 9.2	117	M235I (ATG→ATC)	PP_3718	aminotransferase
Reads supporting (aligned to +/- strand): ref base C (60/51); new base G (3/3); total (63/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01

Only 100 of 119 total aligned reads displayed.

CAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGGAGACGTGGT  >  NC_002947/4240890‑4241183

cAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCa                                                                                                                                                  <  2:2754343/150‑1 (MQ=255)

 aaaCAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCAt                                                                                                                                                 >  2:2829314/1‑150 (MQ=255)

   aCAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGa                                                                                                                                               <  2:871518/150‑1 (MQ=255)

    cAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATgct                                                                                                                                              <  1:711855/150‑3 (MQ=255)

    cAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAt                                                                                                                                              <  1:2829314/150‑1 (MQ=255)

    cAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTACCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAt                                                                                                                                              <  1:1797633/150‑1 (MQ=255)

     aGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCTCGAACGAGGTTACCACTTCGCCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTTGGGCGCAATGATCACCCCCCCCGAGCCCATGAtc                                                                                                                                             <  2:301880/150‑1 (MQ=255)

         ccTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCG‑CCGAGCCGATCAtgggctc                                                                                                                                        >  1:2104636/1‑150 (MQ=255)

          cTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcggctc                                                                                                                                        >  2:842094/1‑150 (MQ=255)

          cTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcg                                                                                                                                            <  1:719257/146‑1 (MQ=255)

          cTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcg                                                                                                                                            >  2:719257/1‑146 (MQ=255)

               tGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCGCAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGGATGATCACCCCGCCGGAGCCCATGCTCGGATCGGCga                                                                                                                                   >  1:940357/1‑150 (MQ=255)

               tGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcggctc                                                                                                                                        <  2:1039370/145‑1 (MQ=255)

               tGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGAtcggctc                                                                                                                                        >  1:1039370/1‑145 (MQ=255)

                ggCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACCGCTGCCACATGCGCGAAAAGTAGCCTTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCgaa                                                                                                                                  <  1:2677929/150‑1 (MQ=255)

                 gCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCGATCAtgggctcgggcggg                                                                                                                                 <  2:3019669/150‑6 (MQ=255)

                  cGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCG‑CCGAGCCGATCAtgggctcgggcggggt                                                                                                                               <  2:2104636/150‑8 (MQ=255)

                      gaagGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgc                                                                                                                            <  2:1845972/150‑1 (MQ=255)

                         ggTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgccgc                                                                                                                         <  2:2389281/150‑1 (MQ=255)

                            gCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCCCAAGGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCAc                                                                                                                      >  1:1569684/1‑150 (MQ=255)

                            gCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCGATCAtgggctcgggcg                                                                                                                                   <  2:1561178/137‑4 (MQ=255)

                            gCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCGATCAtgggctcgggcg                                                                                                                                   >  1:1561178/1‑134 (MQ=255)

                             cccAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACg                                                                                                                     >  2:145026/1‑150 (MQ=255)

                              ccAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGt                                                                                                                    >  2:1151562/1‑150 (MQ=255)

                               cAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgcc                                                                                                                           <  2:879507/142‑1 (MQ=255)

                               cAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGACCACCCCTCCCGATCCCATGATCGGCTTTGCGACGAATGCCGCGACGtt                                                                                                                   >  2:2805370/1‑150 (MQ=255)

                                aGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTg                                                                                                                  >  2:205612/1‑150 (MQ=255)

                                   cgcCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCg                                                                                                               <  1:1151562/150‑1 (MQ=255)

                                    gcCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCgg                                                                                                              <  1:186992/150‑1 (MQ=255)

                                     cccGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGc                                                                                                             >  2:1689108/1‑150 (MQ=255)

                                      ccGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCa                                                                                                            <  1:631644/150‑1 (MQ=255)

                                      ccGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCa                                                                                                            >  2:2496090/1‑150 (MQ=255)

                                                tCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCgg                                                                                                                                   <  2:1899524/117‑2 (MQ=255)

                                                tCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCgg                                                                                                                                   >  1:1899524/1‑116 (MQ=255)

                                                 caccacTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGagag                                                                                                 >  1:2687245/1‑150 (MQ=255)

                                                     acTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATc                                                                                             >  1:2047746/1‑150 (MQ=255)

                                                     acTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATc                                                                                             >  2:2878466/1‑150 (MQ=255)

                                                          gtcgGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTc                                                                                        <  2:285854/150‑1 (MQ=255)

                                                           tcgGCGACCACGACGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTcc                                                                                       <  1:2007270/150‑1 (MQ=255)

                                                               cgacgaACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGa                                                                                   >  1:845615/1‑150 (MQ=255)

                                                                gaccatcAGGATGTCGCATGTCTGGCACAGCTGCCGCATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGGTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGaa                                                                                  <  2:940357/144‑1 (MQ=255)

                                                                   gaACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTc                                                                               >  1:3034170/1‑150 (MQ=255)

                                                                   gaACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTc                                                                               <  1:842094/150‑1 (MQ=255)

                                                                     aCAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgccgcc                                                                                                                        <  2:1556691/107‑1 (MQ=255)

                                                                     aCAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCa                                                                                                        >  2:134565/1‑123 (MQ=255)

                                                                     aCAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCa                                                                                                        <  1:134565/123‑1 (MQ=255)

                                                                       aGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGcc                                                                           >  2:2291726/1‑150 (MQ=255)

                                                                         gATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCg                                                                              >  1:2404340/1‑145 (MQ=255)

                                                                         gATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCg                                                                              <  2:2404340/145‑1 (MQ=255)

                                                                         gATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGccac                                                                         >  2:2632045/1‑150 (MQ=255)

                                                                              cGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGa                                                                    <  2:2687245/150‑1 (MQ=255)

                                                                               gTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGACCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGaa                                                                   >  1:2485277/1‑150 (MQ=255)

                                                                                tcggTCGGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTTGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAg                                                                  >  2:1530198/3‑150 (MQ=255)

                                                                                   gTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAGTGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCg                                                               >  1:298376/1‑150 (MQ=255)

                                                                                     cTGGCACAGCTGCCACATGCGCTGGAAGTATCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAg                                                             <  1:1243015/150‑1 (MQ=255)

                                                                                     cTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAg                                                             <  1:205612/150‑1 (MQ=255)

                                                                                     cTGGCACAGCTGCCAAATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCtt                                                                                           >  1:2906993/1‑120 (MQ=255)

                                                                                     cTGGCACAGCTGCCAAATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCtt                                                                                           <  2:2906993/120‑1 (MQ=255)

                                                                                        gCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAg                                                                      >  2:1657458/1‑138 (MQ=255)

                                                                                        gCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAg                                                                      <  1:1657458/138‑1 (MQ=255)

                                                                                          acaGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACt                                                        >  2:2948385/1‑150 (MQ=255)

                                                                                           caGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAACGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTc                                                       <  2:2390018/150‑1 (MQ=255)

                                                                                               tGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTTGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGcc                                                   <  1:1530198/150‑1 (MQ=255)

                                                                                               tGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTc                                                                               <  1:2928353/122‑1 (MQ=255)

                                                                                               tGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGcc                                                   >  2:312023/1‑150 (MQ=255)

                                                                                                gCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCTACCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCt                                                  <  1:2805370/150‑1 (MQ=255)

                                                                                                   acaTGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCCTGATCGGGTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGt                                               >  2:1517061/1‑150 (MQ=255)

                                                                                                   acaTGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTc                                                       >  1:393725/1‑142 (MQ=255)

                                                                                                      tGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGcc                                                   >  1:544460/1‑143 (MQ=255)

                                                                                                      tGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGcc                                                   <  2:544460/143‑1 (MQ=255)

                                                                                                      tGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCa                                            >  1:337887/1‑150 (MQ=255)

                                                                                                       gcgcTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCAt                                           <  1:2496090/150‑1 (MQ=255)

                                                                                                         gcTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATgt                                         >  1:2516468/1‑150 (MQ=255)

                                                                                                          cTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATgtc                                        >  1:3019135/1‑150 (MQ=255)

                                                                                                            ggAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATgtcgt                                      <  1:1438039/150‑1 (MQ=255)

                                                                                                                gTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAg                                                             <  2:402867/123‑1 (MQ=255)

                                                                                                                gTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAg                                                             >  1:402867/1‑123 (MQ=255)

                                                                                                                 tAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGgc                                 >  2:960646/1‑150 (MQ=255)

                                                                                                                      cTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgccgc                                                                                                                         >  2:267858/1‑57 (MQ=255)

                                                                                                                      cTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATgccgc                                                                                                                         <  1:267858/57‑1 (MQ=255)

                                                                                                                          ggCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTAc                        >  2:2454468/1‑150 (MQ=255)

                                                                                                                             ggAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACggg                     >  1:1166326/1‑150 (MQ=255)

                                                                                                                                   aTCACCCCGCCCGAGCCCATGATCGGCTCGTCGAAGAATGCCACCACGTTGTCTGCACCCAGGGAGAGGATCTTGTCGTCGAACTACGCCACCAGGAAGTTGAGGAACTCCGCCTCGTCCATCTAGTCTAGCACGCGGTAAaggtcgggg               >  2:1256965/1‑150 (MQ=255)

                                                                                                                                    tCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACgggttggggt              >  1:1390855/1‑150 (MQ=255)

                                                                                                                                      aCCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACgggttggggttg            <  2:2047746/150‑1 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATTATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGga          <  1:145026/150‑1 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGc                                                                                                      <  2:696670/58‑1 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGc                                                                                                      >  1:696670/1‑58 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGc                                                                            <  2:608463/84‑1 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGc                                                                            >  1:608463/1‑84 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACgggttggggagcca          >  2:2591130/1‑145 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGggttggggttggg          >  2:1782899/1‑149 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGga          >  1:2577309/1‑150 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGga          >  1:1481052/1‑150 (MQ=255)

                                                                                                                                        cccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGga          >  2:2376802/1‑150 (MQ=255)

                                                                                                                                         ttcgccgAGCCGATCATGGGCTCGG‑GAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGgaga        >  1:1132940/5‑150 (MQ=255)

                                                                                                                                         ccgcccgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTACTAGAACTCTGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGgag         >  2:3024718/1‑150 (MQ=255)

                                                                                                                                              cgAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGGAGACgtg    <  2:2577309/150‑1 (MQ=255)

                                                                                                                                                  cccATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAgg                                                            <  1:1804204/90‑1 (MQ=255)

                                                                                                                                                  cccATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAgg                                                            >  2:1804204/1‑90 (MQ=255)

CAAACAGTTCCTCGCTGGCGAAGAAGGTGCCCAGGCGCCCGAACGAGGTCACCACTTCGTCGGCGACGAACAGGATGTCGTAGGTCTGGCACAGCTGCCACATGCGCTGGAAGTAGCCCTCGGGCGGAATGATCACCCCGCCCGAGCCCATGATCGGCTCGGCGAAGAATGCCGCCACGTTGTCGGCACCCAGCGAGAGGATCTTGTCCTCGAACTCGGCCACCAGGAAGTCGAGGAACTCCGCCTCGTCCATGTCGTCTGGCGCGCGGTACGGGTTGGGGTTGGAGACGTGGT  >  NC_002947/4240890‑4241183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`