| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,909,967 | C→G | 7.2% | intergenic (+315/+164) | PP_4318 → / ← PP_4319 | transposase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,909,967 | 0 | C | G | 7.2% | 230.4 / 6.4 | 82 | intergenic (+315/+164) | PP_4318/PP_4319 | transposase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (33/43); new base G (3/3); total (36/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
CTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCA > NC_002947/4909819‑4910115 | cTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCccatcca > 2:2359596/1‑150 (MQ=37) tttCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCccatccat < 2:1731779/150‑1 (MQ=37) ccGCCATTACGGCGGGTAACTTTTTGTCAAACGCGACAAAAAAAAAAAAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATggg < 2:1131525/150‑1 (MQ=11) cGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGAAGGCCCCATCCATggag < 2:1656144/150‑3 (MQ=18) cGCCCTTACGGCGGGTCACTTTTTGTCAAACCAGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCACAGATGGTGATGAT‑‑GCGGCTGGCGCGCTACGGTCTTGCTCCCGGGAGTAAGCGCTGCAGGCCCCATCCATgggg > 1:2227505/1‑150 (MQ=2) gCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTG‑AGGCCCCATGGATggg < 1:1088056/147‑1 (MQ=12) gCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTG‑AGGCCCCATGGATggg > 2:1088056/1‑147 (MQ=255) gcggGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCt > 1:3064975/1‑150 (MQ=32) gggTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTg < 2:149396/150‑1 (MQ=32) gTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGAc < 1:2359596/150‑1 (MQ=32) gTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACCCTCCGGGGTTCCATCGCAACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGTTCCT‑CAGCGCTTGAc < 2:1513605/150‑1 (MQ=11) gTCACTTTTTGTCAAACGCAACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGAc < 1:2033806/150‑1 (MQ=17) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATGGATGGGGCCt > 2:2442998/1‑138 (MQ=16) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATGGATGGGGCCt < 1:2442998/138‑1 (MQ=16) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACg < 1:143573/150‑1 (MQ=32) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACg > 1:515615/1‑150 (MQ=32) cACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCATATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACgg < 2:2299281/150‑1 (MQ=17) aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACggg < 1:182886/150‑1 (MQ=32) cTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTACAGGCCCCATCCATGGGGc > 2:2267711/1‑133 (MQ=18) cTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTACAGGCCCCATCCATGGGGc < 1:2267711/133‑1 (MQ=18) tttttGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCa > 2:3055640/1‑150 (MQ=32) tttGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATc < 2:692494/150‑1 (MQ=32) tCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATg < 2:1749661/150‑1 (MQ=32) tCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATCGGGCCT‑CAGCGCTTGACGGGCATCCATg > 1:2032397/1‑150 (MQ=17) aaCGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATgg > 2:2935340/1‑120 (MQ=33) aaCGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATgg < 1:2935340/120‑1 (MQ=33) aaCGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGccc > 2:2696452/1‑150 (MQ=32) cgcgACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGt < 1:2696452/150‑1 (MQ=32) cgcgACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGt < 1:1235660/150‑1 (MQ=32) gcgACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTc > 1:479517/1‑150 (MQ=32) gACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGGTCAGGGGCGAACTCGCTGCATGCTCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCAc > 1:1136051/1‑150 (MQ=11) aaaaaGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATgg < 2:2888423/112‑1 (MQ=32) aaaaaGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATgg > 1:2888423/1‑112 (MQ=33) gTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc > 2:2836286/1‑150 (MQ=34) tAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGa < 2:972100/121‑1 (MQ=33) tAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGa > 1:972100/1‑121 (MQ=33) aaaaCGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCa < 1:3070387/120‑1 (MQ=33) aaaaCGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCa > 2:3070387/1‑120 (MQ=33) tGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTc > 2:1673514/1‑150 (MQ=38) ggCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCg < 2:1371271/150‑1 (MQ=38) ggCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCg < 2:2533032/150‑1 (MQ=39) ccTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCt < 2:479517/150‑1 (MQ=38) cTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCtt < 2:3064975/150‑1 (MQ=38) tATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCCTGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTc < 1:2917538/150‑1 (MQ=37) atcatcCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCt < 1:2192954/150‑1 (MQ=38) tcatcCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTg > 1:1184372/1‑150 (MQ=39) catcCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGa < 2:2982683/150‑1 (MQ=39) catcCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGa < 1:1830655/150‑1 (MQ=39) atcCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGaa > 1:2052739/1‑150 (MQ=38) ccGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGt < 2:2032397/150‑1 (MQ=38) ccGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGt < 2:1184372/150‑1 (MQ=39) cGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTc < 2:211866/150‑1 (MQ=39) ggCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCg > 2:2500879/1‑150 (MQ=37) cccTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCCGCTCCCTTCGCAAGCCCTGCGCCCGGCCTAGTGAAGTCGaaa > 2:2096673/1‑150 (MQ=11) cTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATc > 1:1030240/1‑150 (MQ=39) tG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCt < 1:3055640/150‑1 (MQ=39) cgcaggggTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCt < 1:2445551/146‑1 (MQ=255) cGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGaa < 2:515615/150‑1 (MQ=38) ccTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCATTCTGAAGTCGCAATCTGCGTCGCCTGAACTACcgcg > 1:530338/1‑150 (MQ=255) tCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACcgcgcg > 2:1921884/1‑150 (MQ=40) cGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCgcgcgc < 2:1030240/150‑1 (MQ=255) aCGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTAc < 2:2052739/150‑1 (MQ=255) ggTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACaa < 1:1673514/150‑1 (MQ=255) ggTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGTGTCGCCTGAACTACCGCGCGCTTACaa < 2:563335/150‑1 (MQ=255) tCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagc > 2:1931351/1‑150 (MQ=255) tCCCGGGAGTACGCCCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCTGTCCCCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagc > 1:1235221/1‑150 (MQ=255) ctgggAGTACACGCTGCAGGCCGCATCCATGGGGCCT‑TAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcag > 2:198611/3‑150 (MQ=255) gggAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaa < 1:2836286/150‑1 (MQ=255) gggAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaa < 1:1931351/150‑1 (MQ=255) gcgcTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCGCCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCTCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagc < 2:2227505/150‑1 (MQ=255) gcgcTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCACGCCCTTCTCAAGTCGCAAGCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagc > 1:2665242/1‑150 (MQ=255) gcgcTG‑AGGCCCCATGGATGGGGCCTGCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagc < 1:2185665/150‑1 (MQ=17) tGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAgcagaagcagaagcagaagcagaa > 1:1942761/1‑150 (MQ=255) tgaGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACaa > 2:2351455/3‑125 (MQ=255) tgaGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACaa < 1:2351455/123‑1 (MQ=255) gCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagcagaag > 2:733668/1‑150 (MQ=255) aGGCCCCATGGATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagcagaagca > 2:511322/1‑150 (MQ=255) ggCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagcagaagcag > 2:616311/1‑150 (MQ=255) ccccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAGAAGCAGAAGCAGAagcagaagcagca < 2:1942761/150‑1 (MQ=255) ccccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagc > 1:1611642/1‑140 (MQ=255) ccccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAaagcagaagcagaagc < 2:1611642/140‑1 (MQ=255) cccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGc > 2:958020/1‑72 (MQ=35) cccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGc < 1:958020/72‑1 (MQ=35) cccATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAagcagaagcagcag > 1:2073663/1‑150 (MQ=255) atccatGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAagcagaagcagcagaag > 1:2167843/1‑150 (MQ=255) ccatGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAgcagaagcagcagaagca < 2:2073663/150‑1 (MQ=255) | CTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTG‑CGCT‑ACGCTCCGGGGTTCCCTCGCTACGGTCTTGCTCCCGGGAGTACGCGCTGCAGGCCCCATCCATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCA > NC_002947/4909819‑4910115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |