| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,229,227 | G→A | 8.2% | intergenic (‑121/+55) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,229,227 | 0 | G | A | 8.2% | 308.8 / 14.0 | 109 | intergenic (‑121/+55) | PP_4606/PP_4607 | ferric siderophore receptor/transmembrane sensor |
| Reads supporting (aligned to +/- strand): ref base G (52/48); new base A (6/3); total (58/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.59e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
GGGACGCAACGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCG > NC_002947/5229081‑5229376 | gggACGCAACGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCCTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCgg < 1:2518014/150‑1 (MQ=255) gACGCAACGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGAGCATAAATCGCACTTTCACTCAGTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGt > 1:375860/1‑150 (MQ=255) cAACGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAAc < 1:875912/150‑1 (MQ=255) cAACGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAAc < 1:2592051/150‑1 (MQ=255) aaCGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAAcc > 2:179446/1‑150 (MQ=255) aaCGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAAcc > 1:1245890/1‑150 (MQ=255) gcgGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGc > 2:1832210/1‑150 (MQ=255) ggTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑t > 2:552049/1‑150 (MQ=255) gTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCgg < 1:2284967/135‑1 (MQ=255) gTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCgg > 2:2284967/1‑135 (MQ=255) gTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑Ta > 1:2535609/1‑150 (MQ=255) gTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑Ta > 2:2025165/1‑150 (MQ=255) aaCTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGc > 2:1713540/1‑142 (MQ=255) aaCTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGc < 1:1713540/142‑1 (MQ=255) cTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑g < 1:1234583/150‑1 (MQ=255) cTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACATGCTGTTACCTCACCTGTGCCTGGAAATATTTTTACTGTCGCAGCCTCTTCGTAGGTAAACTCGCCCC‑Taaaggg > 2:185763/1‑145 (MQ=255) ttCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑gg < 2:585298/150‑1 (MQ=255) cATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGt < 1:179446/150‑1 (MQ=255) gACGCAGACCTGTGAGGGGGTGATTGCTCTTAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAc < 1:1541993/150‑1 (MQ=255) aCGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCgg < 2:1338531/122‑1 (MQ=255) aCGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCgg > 1:1338531/1‑122 (MQ=255) gCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCg > 2:64298/1‑150 (MQ=255) cAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGt < 1:1622006/150‑1 (MQ=255) aGACCTGTGAGGGGGTGATTACTGCGTTTCTATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTg < 1:129/150‑1 (MQ=255) aCCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGaa < 2:2535609/150‑1 (MQ=255) cTGTGAGGGGGTGATTATTGCGAATCCAACGCACTTTAACTCTTTACTCTGATGCCACTTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAaga < 2:2038371/150‑1 (MQ=255) cTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCTCACATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAaga < 1:808566/150‑1 (MQ=255) cTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGCCAGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAaga > 1:1401176/1‑150 (MQ=25) gAGGGGGTGATCATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCTCCCC‑TACGGG‑GGGTTTACTCGTGAAGAGGCt < 2:2928969/150‑1 (MQ=255) gggggTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTgg < 1:603701/150‑1 (MQ=255) tGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAg < 2:375860/150‑1 (MQ=255) gggttattGCGGATCAATCGCACTTGCACTCATTACACGGAGGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGAGGCCTCTTCGCGGGTCAACCCGCCCC‑TACGCG‑TAGTTGACCGGTGAAGAGGCTGGCACAg < 2:32330/147‑1 (MQ=255) attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCg < 2:2603058/131‑1 (MQ=255) attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCg > 1:2603058/1‑131 (MQ=255) attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGc < 2:1245890/150‑1 (MQ=255) gCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTAc < 1:552049/150‑1 (MQ=255) aatcaatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGCCAGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc > 2:1428572/1‑120 (MQ=25) aatcaatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGCCAGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc < 1:1428572/120‑1 (MQ=21) aatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGACCCa < 2:1585010/150‑1 (MQ=255) aatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCa < 2:1787952/150‑1 (MQ=255) atcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAg > 2:2732652/1‑150 (MQ=255) tcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAgg < 1:2732652/150‑1 (MQ=255) cGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAggg < 1:1832210/150‑1 (MQ=255) cGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAggg < 1:1677076/150‑1 (MQ=255) gCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGt > 1:1982412/1‑150 (MQ=255) cACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGttt < 2:2013155/108‑1 (MQ=255) cACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGttt > 1:2013155/1‑108 (MQ=255) tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAc > 1:1818846/1‑107 (MQ=255) tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAc < 2:1818846/107‑1 (MQ=255) tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAAc < 2:2332042/140‑1 (MQ=255) tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAAc > 1:2332042/1‑140 (MQ=255) cTCATTACACGGATGTCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑gg > 2:1980673/1‑96 (MQ=255) cTCATTACACGGATGTCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑gg < 1:1980673/96‑1 (MQ=255) tCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTAc < 1:2378225/129‑1 (MQ=255) tCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑cccc > 2:1941359/1‑150 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCCCCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑g > 2:1553428/1‑92 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGt < 2:122213/95‑1 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGt > 1:122213/1‑95 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCaa > 1:81422/1‑150 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGGTTAGCCTTGAAGTGGCTGGCACAGGCAACTACCGCAACAGGGTCAAACG‑CCCCaa > 2:346504/1‑150 (MQ=255) ttACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAac > 1:3070256/1‑150 (MQ=255) tACACGGCTGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCgc > 2:908013/1‑100 (MQ=21) tACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCgc < 1:908013/101‑2 (MQ=21) acacGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAg < 1:553520/116‑1 (MQ=255) acacGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAg > 2:553520/1‑116 (MQ=255) ggATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGCCCTCTTCGCGGGTAAACCCTCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTc > 1:2679998/1‑150 (MQ=255) ccACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCCCCCCGTAGGGGCGGGTTTACCCgc > 2:1512994/1‑92 (MQ=25) ccACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCCCCCCGTAGGGGCGGGTTTACCCgc < 1:1512994/93‑2 (MQ=25) cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAccc < 1:72829/88‑1 (MQ=255) cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAccc > 2:72829/1‑88 (MQ=255) gTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc > 2:2644359/1‑84 (MQ=21) gTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc < 1:2644359/84‑1 (MQ=21) tGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAAc > 1:654759/1‑150 (MQ=255) gTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAAcc > 1:2247343/1‑150 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑ggg > 1:324970/1‑72 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑ggg < 2:324970/72‑1 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAGCAGTGAAGAGGCTGGAACAGGCAAGTACCGAACCAGGGACAAACG‑CCACAACAAGGTCTGCCGTGAAAAAccc > 2:511423/1‑150 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAAc < 1:1998907/102‑1 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAAc > 2:1998907/1‑102 (MQ=255) aCCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGcc < 1:2403355/59‑1 (MQ=255) aCCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGcc > 2:2403355/1‑59 (MQ=255) aCCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCAt > 1:1580324/1‑150 (MQ=255) aCCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCAt < 1:346504/150‑1 (MQ=255) cTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAcc < 1:1864731/74‑1 (MQ=255) aCCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCt > 1:1250402/1‑150 (MQ=255) cTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTg > 1:1728391/1‑150 (MQ=255) gAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGaa > 1:264801/1‑150 (MQ=255) gAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGaa < 1:375060/150‑1 (MQ=255) aaTATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCCAGG‑CACGTGTCGCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATc > 2:861813/1‑150 (MQ=38) tatTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCa > 1:445587/1‑150 (MQ=255) cTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGaa > 1:2341369/1‑79 (MQ=255) cTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGaa < 2:2341369/79‑1 (MQ=255) tgtgGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCcagca > 1:796783/1‑150 (MQ=255) agcCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCCGCGAATCCAGCGCCCGCCGCGGCt > 1:2163688/2‑150 (MQ=37) ctctTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCgg > 2:66008/1‑150 (MQ=37) tctTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGc > 2:2812045/1‑150 (MQ=255) tctTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGc > 1:312990/1‑150 (MQ=37) tCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑cc < 1:2190384/80‑1 (MQ=255) tCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑cc > 2:2190384/1‑80 (MQ=255) gcgGGTAAACCCTCCCC‑TACGGT‑GGGTTTACCCGTGAAGAGGCTAGAACTGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCg < 1:185763/150‑1 (MQ=255) | GGGACGCAACGCGGGGTGAACTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCG > NC_002947/5229081‑5229376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |