| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,253,935 | G→C | 5.7% | F249L (TTC→TTG) | PP_4630 ← | MerR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,253,935 | 0 | G | C | 5.7% | 482.4 / 14.9 | 152 | F249L (TTC→TTG) | PP_4630 | MerR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (66/76); new base C (3/6); total (69/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 154 total aligned reads displayed.
GGCCAGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGAT > NC_002947/5253788‑5254081 | ggCCAGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGaa > 2:3066567/1‑150 (MQ=255) cAGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTg > 2:413059/1‑150 (MQ=255) aGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGc < 2:2240234/150‑1 (MQ=255) aGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGc > 2:2981103/1‑150 (MQ=255) aGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGc < 1:758347/150‑1 (MQ=255) aaCTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGCCGCCAGGCACTTCAAGCGCCTg < 2:1442794/150‑1 (MQ=255) cTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGc < 1:1101521/150‑1 (MQ=255) cTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTCAAGCGCCTGGc < 2:2129692/150‑1 (MQ=255) cTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCA‑GCTCCGAACAGGCCGCCCCAGCGACGGGAGGCTGGGCCGCTTGCCCTGCTTCACCACCCACTAACATCGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGc < 1:1136083/150‑1 (MQ=255) tGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCg > 1:481174/1‑150 (MQ=255) ccGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGc < 2:638417/147‑1 (MQ=255) cAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTc > 2:2679954/1‑150 (MQ=255) cAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTCAAGCGCCTGGCgtcgat < 2:776555/150‑6 (MQ=255) aGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTctg < 2:2177273/150‑1 (MQ=255) cTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTctgcacc < 1:1642878/150‑4 (MQ=255) cTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCtgt < 2:2627897/150‑1 (MQ=255) ggCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTACTGTgg < 1:489206/150‑1 (MQ=255) gcgcATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTggg > 1:3032922/1‑150 (MQ=255) cgcATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGc < 2:2855564/150‑1 (MQ=255) gcATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCg > 1:414366/1‑150 (MQ=255) gcATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTCAAGCGCCTg > 2:897863/1‑131 (MQ=255) gcATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTCAAGCGCCTg < 1:897863/131‑1 (MQ=255) tCACCCTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCCGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTAACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACt < 1:207267/150‑1 (MQ=255) cacaCTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGTCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTg < 1:2240505/150‑1 (MQ=255) cacTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGACAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGAt < 1:636971/150‑1 (MQ=255) acTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGGTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATg > 1:1151709/1‑150 (MQ=255) acTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATg < 1:2981103/150‑1 (MQ=255) tGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATggg < 1:136997/150‑1 (MQ=255) cTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGaaaa > 1:2317994/1‑150 (MQ=255) cTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGaaaa < 1:1889799/150‑1 (MQ=255) cTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGaaaa > 1:2944734/1‑150 (MQ=255) tGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAAc > 2:1661226/1‑150 (MQ=255) gcgcgcCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACa < 1:2883175/150‑1 (MQ=255) cgcgcCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAg < 2:2942808/150‑1 (MQ=255) ccAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACa < 2:2659139/144‑1 (MQ=255) ccAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACa > 1:2659139/1‑144 (MQ=255) ccAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCa > 2:3027484/1‑150 (MQ=255) aggcaggcTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 2:1385183/150‑1 (MQ=255) aggcaggcTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 1:946977/150‑1 (MQ=255) aggcaggcTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 1:1586412/150‑1 (MQ=255) aggcaggcTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 1:2305831/150‑1 (MQ=255) aggcTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGt > 2:1750690/1‑150 (MQ=255) ggcTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTACACAGCTAGTAACAACGAGCATTCCATCATCGTCGCCATGCGCTTGAAGTGCCGGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTc < 2:1883635/150‑1 (MQ=255) aCAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGc > 2:2902073/1‑150 (MQ=255) cAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCt < 1:3066567/150‑1 (MQ=255) aGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCtt > 2:376447/1‑150 (MQ=255) aGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGAtt > 1:1077570/1‑150 (MQ=255) gC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCAc < 1:665068/132‑1 (MQ=255) tGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 1:1945697/134‑1 (MQ=255) tGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg > 2:1945697/1‑134 (MQ=255) ccagccagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGt > 1:178830/1‑150 (MQ=255) cagccagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGtt > 2:185152/1‑150 (MQ=255) gccagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg > 1:597685/1‑129 (MQ=255) gccagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 2:597685/129‑1 (MQ=255) ccagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGGAACAACGGGCCTTCCAGCATCGACGCCCGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGc > 2:1517217/1‑150 (MQ=255) cagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg > 2:2932473/1‑127 (MQ=255) cagGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 1:2932473/127‑1 (MQ=255) agGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCtgt > 1:644359/1‑98 (MQ=255) tGTCCTGTATCGCGTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATCGGAAAACATGACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCa < 1:1750690/150‑1 (MQ=255) tGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCa < 1:185152/150‑1 (MQ=255) tCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAgc > 1:1921841/1‑150 (MQ=255) tGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTCAAGCGCCTg < 2:1525131/75‑1 (MQ=38) gTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCaa < 1:2679954/150‑1 (MQ=255) gTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCACTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAgg < 1:2160929/116‑1 (MQ=255) cGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTc > 1:1590440/1‑150 (MQ=255) ttCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTg < 2:2317994/150‑1 (MQ=255) ttCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTg > 1:2637889/1‑150 (MQ=255) ttCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTg > 1:166944/1‑150 (MQ=255) gctgctTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTc < 2:1236090/143‑1 (MQ=255) gctgctTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCACTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTc > 1:1235960/1‑143 (MQ=255) tCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGc < 2:368455/150‑1 (MQ=255) aCCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGccc > 1:1197351/1‑150 (MQ=255) ccagccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATgg > 2:1146550/1‑81 (MQ=255) ccagccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCAcc > 1:849491/1‑93 (MQ=255) ccagccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCg > 2:2534689/1‑150 (MQ=255) cagccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCACAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGt > 1:448734/1‑150 (MQ=255) agccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGtt < 1:657651/150‑1 (MQ=255) gccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTc < 2:166944/150‑1 (MQ=255) gccagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGATGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTc < 1:370168/150‑1 (MQ=255) cagTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGc > 1:1513730/1‑150 (MQ=255) gTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCa < 2:654446/150‑1 (MQ=255) caacGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCgg > 1:1762461/1‑150 (MQ=255) caacGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCgg > 2:469152/1‑150 (MQ=255) caacGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCgg < 1:2534689/150‑1 (MQ=255) atctgggCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGCTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCgg < 1:2805801/146‑1 (MQ=255) gCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTc > 2:2491065/1‑99 (MQ=255) acagtCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTc < 1:2491065/95‑1 (MQ=255) aTTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGc < 2:2576668/113‑1 (MQ=255) aTTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCAcgc > 1:19992/1‑150 (MQ=255) cAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCgtgt < 2:1151709/150‑1 (MQ=255) aGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGtt < 2:1197351/150‑1 (MQ=255) aTCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcg > 2:1214931/1‑150 (MQ=255) tCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcgt > 1:1048176/1‑150 (MQ=255) cGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcgtc < 1:1214931/150‑1 (MQ=255) aCGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGccc > 1:1670710/1‑118 (MQ=255) cAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCa > 2:1743930/1‑131 (MQ=255) aGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGAACCAGGGCGTCCGGCTTCAGCCGTTCGCAGAc > 2:76408/1‑86 (MQ=255) aGGCACTTCAAGCGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTc > 2:649144/1‑117 (MQ=255) aGGCACTTCAAGCGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTc < 1:649144/117‑1 (MQ=255) gAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCa > 2:1082589/1‑65 (MQ=255) | GGCCAGAAACTGCCGCAAGCGCTGGCGCATCACACTGCCCTGCGCGCCCAGGCAGGCTACAGGGC‑TGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGAT > NC_002947/5253788‑5254081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |