| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,343,668 | T→G | 5.6% | L287R (CTG→CGG) ‡ | pgi‑II → | glucose 6‑phosphate isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,343,668 | 0 | T | G | 5.6% | 351.9 / 11.2 | 124 | L287R (CTG→CGG) ‡ | pgi‑II | glucose 6‑phosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base T (53/64); new base G (2/5); total (55/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01 | |||||||||||
Only 100 of 125 total aligned reads displayed.
AGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGC > NC_002947/5343519‑5343816 | cGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGc > 1:2565287/1‑150 (MQ=35) tGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCg > 2:911560/1‑150 (MQ=35) ggTACCGCCACTTCATTGCGTTATCCAGCAACAAGGCCGTGGCTGTAGGGTGGGGTATCCGGGAAGAAAACATTTCCCCAATTGGGGACTGGGTGGGGGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCg < 2:599706/149‑1 (MQ=11) cccGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATGGCCAGGGCGATCGGCa < 2:1833125/149‑1 (MQ=11) aCCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATGGCCAGGGCGATCGGCa < 1:1093762/150‑1 (MQ=11) aCCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATGGCCAGGGCGATCGGCa < 1:308348/150‑1 (MQ=11) aCCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCa > 1:1996028/1‑150 (MQ=35) cGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATGGCCAGGGCGATCGGCag < 2:1158368/149‑2 (MQ=11) cGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGc > 2:1327553/1‑140 (MQ=37) cGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGc < 1:1327553/140‑1 (MQ=37) gCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATc < 1:2769586/143‑1 (MQ=34) ccACTTCATTCCCGTATCAAGCAAAAGGGCCGTTGCGGTGGCGTTCGGTATCCGCGAAGAAACCATCTCCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGc < 1:2646388/150‑1 (MQ=11) cTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCaa > 1:1407984/1‑150 (MQ=35) ttCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAAc > 2:2674905/1‑150 (MQ=35) tttGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCGGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTc < 2:2617827/149‑1 (MQ=21) aTTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGACTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTc > 1:796934/1‑150 (MQ=25) ggCCGTATCCAGCAACAAGCCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCaa < 1:1804538/149‑1 (MQ=25) gCCGTATCCAGCAACAAGGCCGTTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAg < 2:833842/150‑1 (MQ=21) cAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGCAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCAAACTTCAAGGAActgct > 1:881517/1‑150 (MQ=25) cAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAActgct > 2:1389320/1‑150 (MQ=35) cAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAActgct < 1:1761576/150‑1 (MQ=34) aGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAActgctg > 1:1038773/1‑150 (MQ=35) gCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGt > 2:1606933/1‑150 (MQ=34) aacaaGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTcc > 1:2116670/1‑150 (MQ=35) aaaaaGGCCGTTGCTTTAGCGTTCGTTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTcc < 2:796934/147‑1 (MQ=255) acaaGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCg > 1:601675/1‑150 (MQ=35) aaGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGgc > 2:1353777/1‑150 (MQ=35) aaGCCCGCTGCTTTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGCACTGGGTGGGCGGGCACTACTCGGTGTTGTCGGCCATCGGCCTGGCGATCCCCCTTGCTATCTGCACTGCCAACTTCAAGGAACTGCTGTCCGgc < 1:1241156/150‑1 (MQ=11) aGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGgcg > 2:343099/1‑150 (MQ=37) ccGCTGCTGTAGCGTTCGGTATCCGCAAAGAAAACATCTTCCCAATGTGGGACTGGCTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCt < 2:1159744/150‑1 (MQ=255) ctgTGGCGTTCGGTATCCGCAAAGAAAACACCTTCCCATGTTTGGACTGGTTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTC‑AGGAACTGCTGTCCGGCGCCTACACCAt < 2:1567402/150‑1 (MQ=11) tgTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAgg > 1:1563173/1‑125 (MQ=37) tgTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAgg < 2:1563173/125‑1 (MQ=35) tgTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCAt < 2:688951/150‑1 (MQ=38) gTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTAGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATg > 1:928181/1‑150 (MQ=38) ttCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAg < 1:2737588/150‑1 (MQ=38) tCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGc > 1:2763898/1‑150 (MQ=39) tATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACtt > 2:2291328/1‑150 (MQ=39) ccGCGAAGAAAACATCTCCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCa < 2:2452760/150‑1 (MQ=38) gcgAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTa < 1:778883/127‑1 (MQ=39) gcgAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGa > 1:3008969/1‑150 (MQ=39) gcgAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGa > 1:668643/1‑150 (MQ=39) gcgAAAAAAACTTCTTCCAAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCAGGCGCCTACACCATGGACCAGCACTTCCAGa < 1:2098979/150‑1 (MQ=255) gaagaaAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGAcc > 1:2814381/1‑150 (MQ=39) aaCATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGgc > 2:848057/1‑114 (MQ=39) aaCATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGgc < 1:848057/114‑1 (MQ=38) cATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGtt < 2:3008969/150‑1 (MQ=38) cATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGtt < 2:204777/150‑1 (MQ=38) aTCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAg < 2:2798174/129‑1 (MQ=39) aTCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAg > 1:2798174/1‑129 (MQ=40) aTCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTc < 1:1311671/150‑1 (MQ=37) aTCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTc > 2:1161457/1‑150 (MQ=39) tCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCg > 2:3070316/1‑150 (MQ=39) tttCCCAAGGTGGGACTGGGGGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGa < 2:2763898/149‑1 (MQ=255) cTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGa < 2:1733249/150‑1 (MQ=38) tCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTa > 2:2825500/1‑112 (MQ=255) tCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTa < 1:2825500/112‑1 (MQ=40) tCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACa > 1:2217562/1‑150 (MQ=39) ccAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAg < 2:183145/150‑1 (MQ=38) cAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCt < 1:1138785/108‑1 (MQ=40) cAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGAc > 2:2322213/1‑119 (MQ=40) cAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGa > 1:682065/1‑150 (MQ=38) cAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGa < 2:1967722/150‑1 (MQ=38) cAAGGTGGGACGGGGTGGGCGGGCTCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGa < 2:711444/150‑1 (MQ=255) aTGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAAc < 2:668643/150‑1 (MQ=35) ggACTGGGTGGGAGGGCGCTACTCGATGTGGCTCGCCATCGGCCTGCAGATCGCCCTGGCCATCGGCACTGCCAACTACAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGcc < 2:2173626/150‑1 (MQ=11) ggtgggCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATg < 2:1972186/103‑1 (MQ=38) cgggcgCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCTATCTGCTCTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGc > 2:431555/1‑150 (MQ=16) cgggcgCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGc < 1:2883773/150‑1 (MQ=33) cgcTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCctg > 2:566564/1‑150 (MQ=32) aCTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTGTGGCTCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTgg < 1:2674905/150‑1 (MQ=12) tCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGt < 2:2219230/131‑1 (MQ=33) tCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGt > 1:2219230/1‑131 (MQ=32) tCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGc < 1:2291328/150‑1 (MQ=32) cTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCgtg < 1:343099/150‑1 (MQ=32) tgtgGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCgtgt < 1:1775410/150‑1 (MQ=32) gtgGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGtgtg < 1:2233133/150‑1 (MQ=32) gtgGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGtgtg < 2:2231157/150‑1 (MQ=32) ggTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGt < 1:566564/150‑1 (MQ=32) gtcgtcCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGTAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCAACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTa < 1:1540378/150‑1 (MQ=12) tCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGATCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTAt < 2:601675/150‑1 (MQ=17) tCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTAt > 1:1066733/1‑150 (MQ=32) tCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTAt > 1:953088/1‑150 (MQ=32) ggCGATCGGCAGGCCGATGGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATgg > 2:2988877/1‑150 (MQ=255) ggCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCa > 1:2435735/1‑81 (MQ=35) ggCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATgg < 1:1353777/150‑1 (MQ=32) ggCCAGCGGCCTGCCGATCGCCCTGGCCATCGGAACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATgg < 2:2804772/150‑1 (MQ=17) ttggcagtGCCGATGGCCAGGGCGATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAAc > 1:2056704/8‑150 (MQ=11) gcagtGCCGATGGCCAGGGCGATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTc < 2:2056704/146‑1 (MQ=11) gCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGAc < 1:2773164/71‑1 (MQ=35) gCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGAc > 2:2773164/1‑71 (MQ=35) gCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCt > 2:1067321/1‑150 (MQ=32) cTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCTGCAAGACCATGCCGCTGCTACCACCACTGATCGTCGTGTGGTATGGCAACTTCTgg < 1:1606933/150‑1 (MQ=11) gATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTgg > 2:778831/1‑122 (MQ=33) gATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTAATGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGc > 1:194994/1‑150 (MQ=17) gATCGCCCTGGCCATCGGCACTGCCAACTTCAACGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGc < 1:980049/150‑1 (MQ=17) cccTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTGCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGACTATGGCAAGGCAAGTTCTGTGGCCCAAACa > 2:1183834/1‑150 (MQ=11) cccTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACa < 2:1407984/150‑1 (MQ=32) cccTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACa < 2:2116670/150‑1 (MQ=32) cccTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACa < 1:381888/150‑1 (MQ=32) | AGCCGAGCTGTACCGCCACTTCATTGCCGTATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTATCCGCGAAGAAAACATCTTCCCAATGTGGGACTGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGC > NC_002947/5343519‑5343816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |