| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,566,467 | T→A | 5.8% | Q357L (CAG→CTG) | mutL ← | DNA mismatch repair protein MutL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,566,467 | 0 | T | A | 5.8% | 423.1 / 14.6 | 139 | Q357L (CAG→CTG) | mutL | DNA mismatch repair protein MutL |
| Reads supporting (aligned to +/- strand): ref base T (67/63); new base A (5/3); total (73/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.81e-01 | |||||||||||
Only 100 of 146 total aligned reads displayed.
GCAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGG > NC_002947/5566318‑5566616 | gcAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCctgct < 2:3010135/150‑1 (MQ=255) ggggCTGCGAGGGACGGGGGGTGTATTGATACGGGGAACCGGCGCCGCTGCCAGCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCATCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑Gc < 2:929457/148‑1 (MQ=255) tGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTg > 2:1917382/1‑150 (MQ=255) tGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGACCGCAGTCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTg < 1:79346/150‑1 (MQ=255) gCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTgg < 2:2620208/150‑1 (MQ=255) gCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCAGCAG‑GCCGGTga < 1:85252/150‑2 (MQ=255) gCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTCCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTgg < 1:1124969/150‑1 (MQ=255) cGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTggg < 1:1930546/150‑1 (MQ=255) gAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTgggg < 1:1109157/150‑1 (MQ=255) gAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTgggg < 2:137156/150‑1 (MQ=255) tGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAg < 2:2645308/150‑1 (MQ=255) gggTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCACCCGCTTCCGGGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCt > 1:2673363/1‑150 (MQ=255) gtgtATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCa > 2:2053331/1‑150 (MQ=255) gtATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTggg > 1:2609667/1‑135 (MQ=255) gtATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTggg < 2:2609667/135‑1 (MQ=255) aTTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTa > 1:1509429/1‑150 (MQ=255) ttGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTAc < 1:821740/150‑1 (MQ=255) ttGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTAc < 2:1688344/150‑1 (MQ=255) aTACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCa > 2:669163/1‑137 (MQ=255) aTACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGATCAGGTACGgc > 1:1668334/1‑150 (MQ=255) tACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGgca < 2:1238252/150‑1 (MQ=255) aCTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGgcag > 2:985027/1‑150 (MQ=255) tGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGGCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCGGGTGGGTCGAACCAGCTCAGGTACGgcggca > 1:2940165/1‑150 (MQ=255) tGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGgcagca > 1:798282/1‑150 (MQ=255) tGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGgcagca > 2:571856/1‑150 (MQ=255) tGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGgcagca > 1:959169/1‑150 (MQ=255) tGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCGCAGGTACGgcagca < 2:627708/150‑1 (MQ=255) gtcgccgcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAAGTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGc > 1:330738/3‑150 (MQ=255) ccgcTGCCACCATTGGCGACCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGc > 2:3051127/1‑150 (MQ=255) ccgcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGc > 1:1805227/1‑150 (MQ=255) gcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCTAGATCCGGTGAAGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTg > 1:836894/1‑150 (MQ=255) gcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAGGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGccg < 2:1559232/150‑3 (MQ=255) gcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTg < 2:2673363/150‑1 (MQ=255) gcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTg < 2:2995129/150‑1 (MQ=255) ccaccaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCt < 2:99042/150‑1 (MQ=255) ccaccaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCt > 1:1407889/1‑150 (MQ=255) accaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTc > 1:1938614/1‑150 (MQ=255) aTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCg > 2:2767897/1‑133 (MQ=255) aTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCg < 1:2767897/133‑1 (MQ=255) ttGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGa < 2:1636005/150‑1 (MQ=255) ttGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGa < 1:2359131/150‑1 (MQ=255) gACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCg < 1:2587078/150‑1 (MQ=255) cTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGc < 2:176313/150‑1 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTcc < 2:931838/129‑1 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTcc > 1:931838/1‑129 (MQ=255) ggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACg > 1:517930/1‑150 (MQ=255) gAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCctgct < 2:354216/66‑1 (MQ=255) gAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCa < 1:2840094/84‑1 (MQ=255) gAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCa > 2:2840094/1‑84 (MQ=255) gAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCa > 1:638182/1‑150 (MQ=255) aGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCCGCTg > 2:1429433/1‑114 (MQ=255) aGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTg < 1:1429433/114‑1 (MQ=255) cTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGAACGGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGt < 1:31198/150‑1 (MQ=255) ttCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGcc > 2:233411/1‑150 (MQ=255) tCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCa > 1:3031626/1‑150 (MQ=255) cAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCAt > 1:197887/1‑150 (MQ=255) aaGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATa > 1:612461/1‑150 (MQ=255) aaGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCACAGGTACGGCAGCAGGTGCGGCCAGCTGGTCATCACGGCCTACATCGGCCAAGGCACGGTGCAAGGTGCCATa > 1:2214124/1‑150 (MQ=255) aGCACCGGCGAGGCCAGGCGCATTTCACCCTGCGCCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAc > 1:592816/1‑150 (MQ=255) gCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACa > 1:426907/1‑150 (MQ=255) gCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACa < 2:3031626/150‑1 (MQ=255) cACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTc < 2:1656531/108‑1 (MQ=255) cACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTc > 1:1656531/1‑108 (MQ=255) cACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCa > 1:2232892/1‑145 (MQ=255) cACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCa < 2:2232892/145‑1 (MQ=255) cGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCAAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGaa < 2:511781/150‑1 (MQ=255) gCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTc > 2:2575079/1‑103 (MQ=255) ggCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATg < 1:2868265/150‑1 (MQ=255) cAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGACATGCaa > 2:1896966/1‑149 (MQ=255) aGGCGCATTTCACCCTGGGGCCCGAACTCACAGGCCTGCCGAGACGG‑ATGCTTAACCATCTCAGGTACGGCATGAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGATGCAAGGTGCCATACAGGAAGTCATGCAcc > 1:534935/1‑150 (MQ=255) gcgcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGa > 2:2773739/1‑150 (MQ=255) gcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAg > 2:2979291/1‑110 (MQ=255) gcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAg < 1:2979291/110‑1 (MQ=255) gcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAgc < 1:2149673/150‑1 (MQ=255) tttCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGcc > 2:1715125/1‑150 (MQ=255) tttCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGcc > 2:1030032/1‑150 (MQ=255) ccTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTcgc < 2:836894/150‑1 (MQ=255) ccTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTcgc < 2:1938614/150‑1 (MQ=255) ccTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTcgc > 1:134943/1‑150 (MQ=255) ggCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAc < 2:1756622/150‑1 (MQ=255) gCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCCGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAcc > 1:2513839/1‑150 (MQ=255) cccGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAcag > 2:1500232/1‑148 (MQ=255) cccGAACCCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTcc < 1:792460/76‑1 (MQ=255) cGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGc < 1:1854470/108‑1 (MQ=255) gccccACCGGCCAGCAG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACt > 2:1726925/5‑150 (MQ=255) ccccACCGGCCAGCAG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAt < 2:796318/117‑1 (MQ=255) ccccACCGGCCAGCAG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACtt > 2:1455068/4‑150 (MQ=255) ccccACCGGCCAGCAG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACtt > 2:3064545/4‑150 (MQ=255) cccACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTcgc > 1:2323577/3‑137 (MQ=255) cccACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTcgc < 2:2323577/135‑1 (MQ=255) cccACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTc > 1:429998/3‑150 (MQ=255) cTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTc < 2:134943/150‑1 (MQ=255) tCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCa > 2:2392595/1‑150 (MQ=255) tCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCa > 2:2390723/1‑150 (MQ=255) aCCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATg > 1:1548232/1‑150 (MQ=255) aCCGGCCAGCAG‑GCCGGTGAGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATg > 1:1418772/1‑150 (MQ=255) ctgctg‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCttggt > 2:2216485/1‑150 (MQ=255) tgctg‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGaa < 2:1326084/131‑1 (MQ=255) tgctg‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGaa > 1:1326084/1‑131 (MQ=255) tg‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTggg < 2:2841166/150‑1 (MQ=255) | GCAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTG‑GCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGG > NC_002947/5566318‑5566616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |