| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,737,658 | G→C | 16.8% | intergenic (‑157/+45) | hutU ← / ← PP_5034 | urocanate hydratase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,737,658 | 0 | G | C | 16.8% | 238.8 / 39.8 | 95 | intergenic (‑157/+45) | hutU/PP_5034 | urocanate hydratase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (39/40); new base C (9/7); total (48/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
GTCCTCTGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAACCCCAA > NC_002947/5737509‑5737801 | gTCCTCTGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCgcgg < 1:1997174/150‑1 (MQ=255) tCCTCTGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCgcggg < 1:51483/150‑1 (MQ=255) tCCTCTGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCgcggg > 1:2155561/1‑150 (MQ=255) tCCTCTGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCgcggg < 1:945697/150‑1 (MQ=255) ctctGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCgcgggcg < 1:1419415/150‑1 (MQ=255) tctGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCgcgggcgg > 1:2750096/1‑150 (MQ=255) ctGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGggcggc < 2:2750096/150‑1 (MQ=255) gCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTCGGGGTATAGATCGAGCGCCGCCCGCGCGgcgc < 1:2106070/150‑1 (MQ=255) ggTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACGAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTc > 1:1510440/1‑150 (MQ=255) ggTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTc > 2:260354/1‑150 (MQ=255) ggTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTc < 1:821783/150‑1 (MQ=255) cgtcCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGAt < 1:260354/150‑1 (MQ=255) gcgggcggGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGCACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑cac < 2:2155561/150‑1 (MQ=255) tCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAAt > 2:1655418/1‑150 (MQ=255) tCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAAt > 1:986756/1‑150 (MQ=255) ggTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTAc < 1:582303/150‑1 (MQ=255) ggTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTAc < 2:2373563/150‑1 (MQ=255) ataCAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGaa > 1:2450212/1‑150 (MQ=255) aaaCACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCtt > 1:1413400/1‑150 (MQ=255) aaaCACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCtt > 2:2177220/1‑150 (MQ=255) aaaCACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCtt > 1:2965404/1‑150 (MQ=255) acacCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAgc < 2:1510440/150‑1 (MQ=255) acacCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAgc > 1:1416706/1‑150 (MQ=255) cccTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAgcgc < 1:1421051/149‑1 (MQ=255) ccTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGcc < 1:258180/150‑1 (MQ=255) cTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGccc < 2:2450212/150‑1 (MQ=255) cTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGccc > 1:2037329/1‑150 (MQ=255) tACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATc < 1:1759621/150‑1 (MQ=255) cTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCaa < 1:877326/150‑1 (MQ=255) ttGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAg > 1:60050/1‑150 (MQ=255) gtatgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGtt < 2:2965404/150‑1 (MQ=255) gtatgtaCAAGCATGGACAACCAAAATAATCGGACCTAAGCGTTCCTGGCGGGAGATTTCTGTTGGGGTATAGAACCACCTGTTCGAACACCACGCGCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTACAGACCCCATCAAGtt > 1:2994914/1‑150 (MQ=255) tatctaCAAGCATCGCCAACCAAAATCATCGGAACTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTc < 2:1413400/150‑1 (MQ=39) atgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGGCCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCg > 2:645022/1‑150 (MQ=255) tgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCCCGCGCGGCGCTCg < 2:1514211/96‑1 (MQ=255) tgtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCCCGCGCGGCGCTCg > 1:1514211/1‑96 (MQ=255) gtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt > 2:1411080/1‑150 (MQ=255) gtaCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt < 1:1655418/150‑1 (MQ=255) aCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCa > 1:23291/1‑150 (MQ=255) aCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCa < 1:1220375/150‑1 (MQ=255) aCAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCa > 1:1653280/1‑150 (MQ=255) aaGCATGGACAACCAAAATCATCGGACCTTATAGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAgg < 2:2037329/150‑1 (MQ=255) aaGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATc > 2:2224449/1‑137 (MQ=255) aaGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATc < 1:2224449/137‑1 (MQ=255) aaGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAgg < 2:60050/150‑1 (MQ=255) aaGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCCCGCGCGgcgc < 2:316001/88‑1 (MQ=255) aaGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCCCGCGCGgcgc > 1:316001/1‑88 (MQ=255) gCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATc > 1:510229/1‑145 (MQ=255) gCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATc < 2:510229/145‑1 (MQ=255) aaCCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGcc > 2:642937/1‑150 (MQ=255) cAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt > 2:2469664/1‑133 (MQ=255) cAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGAt < 1:2469664/133‑1 (MQ=255) cAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGgc < 2:2622839/138‑1 (MQ=255) cAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGgc > 1:2622839/1‑138 (MQ=255) cAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCt < 1:2177220/150‑1 (MQ=255) taatCGGACCTTACCGTTCCTGGCTTTAGATTTATGTTGGGCTATAGAGCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGACGAACCTTCAGCGCCCCTCAAGTTCGATCAGGCAGCACCGCCCCTGcaca > 1:716021/1‑150 (MQ=39) cTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCa < 2:387568/101‑1 (MQ=255) cTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCa > 1:387568/1‑101 (MQ=255) cTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAgg < 2:2847661/123‑1 (MQ=255) cTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAgg > 1:2847661/1‑123 (MQ=255) tACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAg > 1:891294/1‑150 (MQ=255) cGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCaa > 2:2944628/1‑150 (MQ=255) cTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGcccc < 2:1211314/125‑1 (MQ=255) cTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGcccc > 1:1211314/1‑125 (MQ=255) ggCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATtcatca < 1:1411080/150‑1 (MQ=255) cTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATtcatcact < 2:1653280/150‑3 (MQ=255) ttGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCa > 1:1557638/1‑86 (MQ=255) ttGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCa < 2:1557638/86‑1 (MQ=255) ttGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCa < 1:1102158/106‑1 (MQ=255) ttGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCa > 2:1102158/1‑106 (MQ=255) ttGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTg > 1:1036021/1‑150 (MQ=255) gagaTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCg > 1:133267/1‑100 (MQ=255) gagaTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCg < 2:133267/100‑1 (MQ=255) gagaTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGcccc > 1:2797494/1‑133 (MQ=255) gagaTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGcccc < 2:2797494/133‑1 (MQ=255) gaTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCtt < 2:891294/150‑1 (MQ=255) aTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCGGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTc > 1:878892/1‑150 (MQ=255) aTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTc > 2:2977553/1‑150 (MQ=255) aTTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTc > 2:1936273/1‑150 (MQ=255) ttGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGc > 1:1562867/1‑126 (MQ=255) ttGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGc < 2:1562867/126‑1 (MQ=255) ctgtgaGATCGAGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGc > 2:527821/6‑150 (MQ=255) tataGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAg < 2:2994914/150‑1 (MQ=255) taGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATc < 2:160436/85‑1 (MQ=255) taGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATc > 1:160436/1‑85 (MQ=255) gATCGAGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGa > 2:1215088/1‑150 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGc > 1:742413/1‑115 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGc < 2:742413/115‑1 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAg < 1:3005361/145‑1 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAg > 2:3005361/1‑145 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGccc > 1:2544133/1‑95 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGccc < 2:2544133/95‑1 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGaac < 1:1936273/150‑1 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAAt < 1:136700/114‑1 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAAt > 2:136700/1‑114 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCAAAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTc < 2:1763435/143‑1 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCAAAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTc > 1:1763435/1‑143 (MQ=255) gcgcCGCGCGGGCGGCGC‑CTATCTACACGGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAAcc < 2:716021/150‑1 (MQ=255) gccgcGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAAcccc > 1:2785176/1‑150 (MQ=255) cgcgcgGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAACCCCaa > 1:441013/1‑150 (MQ=255) | GTCCTCTGCGGTCGTCCGCGGGCGGGTATGTCGTGGTCAATATACAAACACACCTTTACTTGTATGTACAAGCATGGACAACCAAAATAATCGGACCTTACCGTTCCTGGCTTGAGATTTATGTTGGGGTATAGATCGAGCGCCGCGCGGGCGGCGCTCGATCT‑CACAGGCGCCAAAAATCTACAGCCGAACCTTCAGCGCCCATCAAGTTCGATCAGGCAGCACCGCCCCTGCACAACCAGCCCCAGCAATTCATCATTGCCTTCCAGCCGCAAGCAGTCGAACAACCCCAA > NC_002947/5737509‑5737801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |