Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 6,098,326 (CAAGCTGCG)2→1 coding (811‑819/867 nt) PP_5350 ← RpiR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 6098315 6098323 9 325 [0] [0] 327 PP_5350 RpiR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6098324 =0 (0.000)293 (1.140) 121/274 0.4 100% coding (821/867 nt) PP_5350 RpiR family transcriptional regulator
?NC_002947 = 6098314 0 (0.000)coding (831/867 nt) PP_5350 RpiR family transcriptional regulator

Only 100 of 325 total aligned reads displayed.

TACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGG  >  NC_002947/6098165‑6098453
                                                                                                                                                     |                                                                                                                                           
tACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGa                                                                                                                                             <  1:2227700/150‑1 (MQ=255)
gaCCGGCCTCTTCGCGGGCTTGCCCCGTTCCCACAGGAATTGCACCGATTGATAGAAGTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGa                                                                                                                                             <  2:5156989/149‑1 (MQ=255)
   cGGCCTCTTCGCGGGCTTGCCCCGTTGACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                          <  1:883815‑M2/150‑4 (MQ=255)
   cGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                          <  1:759500‑M2/150‑4 (MQ=255)
     gCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACCTGGGCGACAGAcgcaa                                                                                                                                        <  2:2005184‑M2/150‑6 (MQ=255)
        tctTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagct                                                                                                                                     <  2:745488‑M2/150‑9 (MQ=255)
        tctTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagct                                                                                                                                     <  1:4751050‑M2/150‑9 (MQ=255)
          ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                   <  2:414552‑M2/150‑11 (MQ=255)
          ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                   <  1:3849871‑M2/150‑11 (MQ=255)
          ttCGCGGGCGTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                   >  2:5242687‑M2/1‑140 (MQ=255)
             gcgGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtt                                                                                                                                <  2:2117427‑M2/150‑14 (MQ=255)
                ggCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttca                                                                                                                             >  2:3310287‑M2/1‑134 (MQ=255)
                   ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                          <  1:373361‑M2/150‑20 (MQ=255)
                   ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCGGTGGGAGCGGGCAAGCCCGCGAACCGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                          <  1:5631725‑M2/150‑20 (MQ=255)
                     gCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctc                                                                                                                        <  2:828880‑M2/150‑22 (MQ=255)
                       cccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctctt                                                                                                                      <  2:5006648‑M2/150‑24 (MQ=255)
                       cccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctctt                                                                                                                      >  2:5761409‑M2/1‑127 (MQ=255)
                       cccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctctt                                                                                                                      <  2:2991872‑M2/150‑24 (MQ=255)
                        ccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttc                                                                                                                     <  2:5955599‑M2/150‑25 (MQ=255)
                        ccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttc                                                                                                                     <  2:2805653‑M2/150‑25 (MQ=255)
                         cGTTCACACAGGAATTGCACCGTTTTATAGACGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttca                                                                                                                    >  1:45585‑M2/1‑125 (MQ=255)
                         cGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttca                                                                                                                    >  2:1634115‑M2/1‑125 (MQ=255)
                            tCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggt                                                                                                                 <  1:2849917‑M2/150‑29 (MQ=255)
                             cacacaGTATGTGCACCGTTTTATAGATGTGAAAAGTACCTGTGTGAGCGGTAAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtg                                                                                                                >  1:1676997‑M2/1‑121 (MQ=255)
                              acacaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtgg                                                                                                               <  1:2433569‑M2/150‑31 (MQ=255)
                              acacaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtgg                                                                                                               <  1:5239691‑M2/150‑31 (MQ=255)
                                acaGTAATTGCACCTATTTATAGAAGTCCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                             >  1:5713429‑M2/1‑118 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                             <  2:4315611‑M2/150‑33 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                             >  1:2359253‑M2/1‑118 (MQ=255)
                                    gAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacc                                                                                                         <  2:4938769‑M2/150‑37 (MQ=255)
                                       ttGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccagg                                                                                                      <  1:6001420‑M2/150‑40 (MQ=255)
                                        tGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGTGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggc                                                                                                     >  1:5340190‑M2/1‑110 (MQ=255)
                                           aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTAGAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                  <  1:1495675‑M2/150‑44 (MQ=255)
                                           aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                  <  1:3335748‑M2/150‑44 (MQ=255)
                                           aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                  >  1:1805012‑M2/1‑107 (MQ=255)
                                              gATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcc                                                                                               <  1:1708630‑M2/150‑47 (MQ=255)
                                                tttATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccg                                                                                             >  1:429621‑M2/1‑102 (MQ=255)
                                                  tataGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcg                                                                                           <  2:2598525‑M2/150‑51 (MQ=255)
                                                   ataGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggcta                                                                                                   <  1:280222‑M2/141‑43 (MQ=255)
                                                     aGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgc                                                                                        <  2:2405723‑M2/150‑54 (MQ=255)
                                                     aGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgc                                                                                        <  1:3963956‑M2/150‑54 (MQ=255)
                                                       aaGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgcca                                                                                      >  2:3200585‑M2/1‑95 (MQ=255)
                                                            cacaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggca                                                                                 <  2:1312761‑M2/150‑61 (MQ=255)
                                                             acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaa                                                                                <  2:1952758‑M2/150‑62 (MQ=255)
                                                             acaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaa                                                                                >  2:3026062‑M2/1‑89 (MQ=255)
                                                              caGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaac                                                                               >  2:4409137‑M2/1‑88 (MQ=255)
                                                               aGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacg                                                                              <  2:5533977‑M2/150‑64 (MQ=255)
                                                                 gacCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcc                                                                            >  2:5422434‑M2/2‑85 (MQ=255)
                                                                       tgGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggc                                                                      >  1:1311772‑M2/1‑79 (MQ=255)
                                                                        gggAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggcc                                                                     >  2:4014080‑M2/1‑78 (MQ=255)
                                                                          gAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccag                                                                   >  2:2620188‑M2/1‑76 (MQ=255)
                                                                          gAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccag                                                                   <  2:458129‑M2/150‑75 (MQ=255)
                                                                               ggCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgt                                                              <  1:4392288‑M2/150‑80 (MQ=255)
                                                                                gCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtc                                                             <  1:5863454‑M2/150‑81 (MQ=255)
                                                                                gCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtc                                                             <  1:1937572‑M2/150‑81 (MQ=255)
                                                                                gCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtc                                                             <  1:1448991‑M2/150‑81 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcac                                                       <  1:314851‑M2/150‑87 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcac                                                       <  1:4256967‑M2/150‑87 (MQ=255)
                                                                                       cgcgAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcacc                                                      >  2:1677219‑M2/1‑63 (MQ=255)
                                                                                            aCAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccag                                                 <  2:1112149‑M2/150‑93 (MQ=255)
                                                                                              aGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggt                                               <  2:4846407‑M2/150‑95 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                             >  1:1204816‑M2/1‑54 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                             >  2:1781093‑M2/1‑54 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                             >  1:4117474‑M2/1‑54 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                             >  1:976303‑M2/1‑54 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                             <  1:81526‑M2/150‑97 (MQ=255)
                                                                                                 ccAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtggg                                            >  2:469822‑M2/1‑53 (MQ=255)
                                                                                                  cAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggc                                           <  1:2776534‑M2/150‑99 (MQ=255)
                                                                                                       cAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggccctcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatac                                      >  1:5078873‑M2/1‑47 (MQ=255)
                                                                                                       cAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatac                                      <  2:4242436‑M2/150‑104 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                  >  1:637710‑M2/1‑43 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                  >  2:4391701‑M2/1‑43 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                  <  1:5807705‑M2/150‑108 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                  >  2:2701922‑M2/1‑43 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                  >  1:3202668‑M2/1‑43 (MQ=255)
                                                                                                             gAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgagg                                <  2:2750561‑M2/150‑110 (MQ=255)
                                                                                                             gAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgagg                                <  2:804882‑M2/150‑110 (MQ=255)
                                                                                                                ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtca                             <  2:5047090‑M2/150‑113 (MQ=255)
                                                                                                                ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtca                             <  1:5790466‑M2/150‑113 (MQ=255)
                                                                                                                   aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                          >  2:1215771‑M2/1‑35 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                        >  2:3378002‑M2/1‑33 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                        <  1:5506291‑M2/150‑118 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                        >  1:4854270‑M2/1‑33 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcga                                                           <  1:4651138‑M2/115‑83 (MQ=255)
                                                                                                                      cgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtgggg                       >  2:1551599‑M2/1‑32 (MQ=255)
                                                                                                                       gtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggt                      >  1:2705434‑M2/1‑31 (MQ=255)
                                                                                                                                cTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctc             <  1:365171‑M2/150‑129 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg            >  1:2059734‑M2/1‑21 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg            >  1:2110463‑M2/1‑21 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg            >  1:5191262‑M2/1‑21 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt          <  1:1023395‑M2/150‑132 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt          >  2:3830838‑M2/1‑19 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt          >  2:364418‑M2/1‑19 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt          >  1:5047090‑M2/1‑19 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt          <  1:3550109‑M2/150‑132 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt          >  1:2750764‑M2/1‑19 (MQ=255)
                                                                                                                                       gACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtct      <  2:4886473‑M2/150‑136 (MQ=255)
                                                                                                                                         cTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaaaacgcgaggtcagtggggtgtagatctcggtgtcttc    <  1:2295638‑M2/150‑138 (MQ=255)
                                                                                                                                          ttGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtccgtggggtgtagatctcggtgtcttca   <  1:5471853‑M2/150‑139 (MQ=255)
                                                                                                                                           tGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcat  >  2:2317834‑M2/1‑11 (MQ=255)
                                                                                                                                                     |                                                                                                                                           
TACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGG  >  NC_002947/6098165‑6098453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑