New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000959 =	62 (1.320)	9 (0.250)	8/214	3.2	18.5%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6001053 =	31 (0.850)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGA  >  NC_002947/6000907‑6001200                                                                                                                                                   |                                                                                                                                                     tgcaatcaaGAAGGGTGGCGTCCTGAGTTGGGTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTa                                                                                                                                                   <  2:394230/148‑1 (MQ=255)    aatcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGCGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACtt                                                                                                                                                >  2:478667/1‑150 (MQ=255)      tcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTac                                                                                                                                              >  1:55890/1‑150 (MQ=255)      tcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTac                                                                                                                                              >  1:975441/1‑150 (MQ=255)             gggTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaacacaa                                                                                                                                       <  2:1077327/150‑1 (MQ=255)                    ttCCGGGGTTGGTTGCACAAGTGAGCCGGTGCCGGCCTATGCGCGGGTAACCCCGCTCCTACAAGAAGTGGACCGCCTGAGAGGGCTGTGGTGAACCTGTAGAAGCGGGTTTTCCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAg                                                                                                                                <  2:1136210/150‑1 (MQ=255)                    tgccTGAGTTGGTTGCACAAGTGAGCCGGTGCCGGGCTCGTCGGGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGAAGCGGGTCTACCCGCGAGGAGGCCGGTACTTACAACACAGCCCTCAg                                                                                                                                <  2:413733/148‑1 (MQ=255)                            ttggttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGcc                                                                                                                        <  1:1020996/150‑1 (MQ=255)                                    acaAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTac                                                                                                                                              <  2:801454/120‑1 (MQ=255)                                    acaAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTac                                                                                                                                              >  1:801454/1‑120 (MQ=255)                                       aGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTAc                                                                                                             >  2:746615/1‑150 (MQ=255)                                        gTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACa                                                                                                            <  2:424617/150‑1 (MQ=255)                                          gAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc                                                                                                          <  2:990099/150‑1 (MQ=255)                                                 tgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAAc                                                                                                   <  2:55890/150‑1 (MQ=255)                                                   ccGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCg                                                                                                 <  2:975441/150‑1 (MQ=255)                                                   ccGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCg                                                                                                 <  2:1023058/150‑1 (MQ=255)                                                      gCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGAc                                                                                              <  1:613942/150‑1 (MQ=255)                                                          ctTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAAAGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCAt                                                                                          <  1:404545/150‑1 (MQ=255)                                                                 ggTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGc                                                                                   >  1:1019577/1‑150 (MQ=255)                                                                  gTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGATGCCAGTACTTCCAACACAAACCTAAAGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCt                                                                                  >  1:635965/1‑150 (MQ=255)                                                                              cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGaa                                                                      <  2:285631/150‑1 (MQ=255)                                                                                  aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGaaaaa                                                                                                    <  1:239633/116‑1 (MQ=255)                                                                                  aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGaaaaa                                                                                                    >  2:239633/1‑116 (MQ=255)                                                                                  aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCAGTAGGAGCGGGTTTACGCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGCACGCTGTCCGCAGCGAAGccg                                                                  >  2:418667/1‑150 (MQ=255)                                                                                          cACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTc                                                                               >  1:264316/1‑129 (MQ=255)                                                                                          cACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTc                                                                               <  2:264316/129‑1 (MQ=255)                                                                                            ccGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACAcc                                                        >  2:362552/1‑150 (MQ=255)                                                                                              gCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCGCACACCGc                                                      >  2:343912/1‑150 (MQ=255)                                                                                                     agGGCTGTGGTGAACCTGTAGGAGCGGGTGTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCgg                                              <  2:181319/150‑1 (MQ=255)                                                                                                     aagcgtgtgGTGAGCCTGTAGGAGACGGTTTACGCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCgg                                              <  2:181339/145‑1 (MQ=255)                                                                                                                    cTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGAATCgg                               >  1:141940/1‑150 (MQ=255)                                                                                                                     tGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGAATCGGc                              <  1:478667/150‑1 (MQ=255)                                                                                                                          gAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGAATCGGCAGGCt                         >  2:986857/1‑150 (MQ=255)                                                                                                                                      ccGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                                                           <  2:1061672/73‑1 (MQ=255)                                                                                                                                      ccGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                                                           <  1:906169/73‑1 (MQ=255)                                                                                                                                      ccGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                                                           >  1:1061672/1‑73 (MQ=255)                                                                                                                                      ccGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa                                                                                           >  2:906169/1‑73 (MQ=255)                                                                                                                                       cgcgAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGa                                    >  1:240421/1‑126 (MQ=255)                                                                                                                                       cgcgAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGa                                    <  2:240421/126‑1 (MQ=255)                                                                                                                                        gcgAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑GCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCt           >  1:230282/1‑150 (MQ=255)                                                                                                                                           aaGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATAGCGGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGa        >  1:58340/1‑150 (MQ=255)                                                                                                                                              agGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCa     <  2:1019577/150‑1 (MQ=255)                                                                                                                                                gCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑GCGTCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCCgg   >  2:207542/1‑150 (MQ=255)                                                                                                                                                 ccAGTACTTACAACAAAACCCTCAGGCACTGCCCCGCGGGGTACAGCGAAAAACCGGACTCATAGAAAGCTATCCGAAACCAAGGAGCCATC‑CAAAGCGAGAACGGGGAAAATTGAAGCGGCAGGCTGTCCGCCGCGCCCTTGAGCAGGa  >  2:812492/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGC‑TCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGA  >  NC_002947/6000907‑6001200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.