New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4159113 =31 (1.000)7 (0.250) 7/260 2.5 20.0% intergenic (+17/‑192) PP_3661/PP_3662 membrane protein/hypothetical protein
?NC_002947 4159201 = 28 (0.990)intergenic (+105/‑104) PP_3661/PP_3662 membrane protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

CTTTGACACCACCATACCGAGAAATGTGGACGGCAACGAGGGGGGCTGTGAAAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4159272‑4159113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagcagGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCCCCAAAG  >  NC_002947/4159201‑4159347
                                                                                                                                                                                                                                                                                                                   
CTTTGACACCACCATACCGAGAAATGTGGACGGCAACGAGGGGGGCTGTGAAAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACC                                                                                                                                                               <  2:685270/150‑1
   TGACACCACCATACCGAGAAATGTGGACGGCAACGAGGGGGGCTGTGAAAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCCCCTGTAGGAGCGGGTTTCCCCGC                                                                                                                                                            >  2:73281/1‑150
         CACCATACCGAGAAATGTGGACGGCAACGAGGGGGGCTGTGAAAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCA                                                                                                                                                      >  1:443206/1‑150
         CACCATACCGAGAAATGTGGACGGCAACGAGGGGGGCTGTGAAAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGATTTCATTGCCTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCA                                                                                                                                                      >  2:18964/1‑150
                                                   AAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACAGCTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTATCAAGGTTTTTCTCAGCCCCCCTCGTTGCC                                                                                                            >  1:512120/1‑150
                                                                 GAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCG                                                                                              >  1:704573/1‑150
                                                                                    TGACCCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGCCGACTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAA                                                                           <  2:512120/150‑1
                                                                                        CCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGAT                                                                       >  2:647320/1‑150
                                                                                               CTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTAC                                                                >  2:76041/1‑150
                                                                                                 ACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCC                                                              <  1:647320/150‑1
                                                                                                                  TTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAG                                             <  2:704573/150‑1
                                                                                                                                                   cCCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTC            <  2:701344/149‑1
                                                                                                                                                     CCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAG          >  2:85170/1‑150
                                                                                                                                                       GCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCC        <  1:76041/150‑1
                                                                                                                                                       GCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCC        >  2:493669/1‑150
                                                                                                                                                        CGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCCC       <  1:371048/150‑1
                                                                                                                                                           AGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCCCCAA    >  1:148055/1‑150
                                                                                                                                                             CAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCCCCAAAG  <  2:50627/150‑1
                                                                                                                                                                                                                                                                                                                   
CTTTGACACCACCATACCGAGAAATGTGGACGGCAACGAGGGGGGCTGTGAAAAACCTTGAGACCGAGCTGCCTGCTTCGCGGGTGAACCCGCTCCTACAGGGGCCTTGCCGTCTTCAGGGCAGCACCCACCTGTAGGAGCGGGTTTACCCGCGAAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4159272‑4159113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagcagGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAGAAGGATGTTTTACCCGCACAGGAAAGACTTAGATGCCTCAACGCCATGTCATCAATGCATCCGTCAGCCCCAAAG  >  NC_002947/4159201‑4159347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.