New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899243 =	41 (1.320)	9 (0.300)	7/278	2.7	20.3%	intergenic (+271/‑249)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899337 =	31 (1.030)					intergenic (+365/‑155)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAC  >  NC_002947/1899095‑1899386                                                                                                                                                      |                                                                                                                                                gctcctgtggaaaacgcaaaaaggcgccggctgccccggcatgctgatgcaagcggggcaacacggcgcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccg                                                                                                                                                 <  1:134547‑M1/1‑1 (MQ=255)  tcttctTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGACTGGGAGCCTGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGc                                                                                                                                               <  1:195400/150‑1 (MQ=255)          ccGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCCCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTcgc                                                                                                                                       >  2:285033/1‑150 (MQ=255)                  tCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGc                                                                                                                               >  1:453671/1‑150 (MQ=255)                   cAGCACCTCAAACCCGTCCTCGATCACCGGCCTCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGATATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGcc                                                                                                                              <  2:573142/150‑1 (MQ=255)                    aGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGccc                                                                                                                             <  1:204977/150‑1 (MQ=255)                      cACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGc                                                                                                                           >  2:109940/1‑150 (MQ=255)                         cTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTcc                                                                                                                        <  1:342550/150‑1 (MQ=255)                          tCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTccc                                                                                                                       >  2:134547/1‑150 (MQ=255)                          tCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTccc                                                                                                                       >  1:217042/1‑150 (MQ=255)                              aCCCGTCCTCGATCACCGGCATCTACTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                   >  2:481966/1‑150 (MQ=255)                                    ccggcatgctgatgcaagcggggcaacacggcgcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                              <  2:47189‑M1/36‑1 (MQ=255)                                             ccGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCt                                                                                                    >  1:164301/1‑150 (MQ=255)                                              cGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTc                                                                                                   >  1:72496/1‑150 (MQ=255)                                                  aTCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGc                                                                                               <  1:413474/150‑1 (MQ=255)                                                  aTCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGc                                                                                               <  1:413760/150‑1 (MQ=255)                                                       cTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGc                                                                                          <  1:508605/150‑1 (MQ=255)                                                       cTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGACCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGc                                                                                          <  1:187012/150‑1 (MQ=255)                                                        tGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCt                                                                                                    >  1:233379/1‑139 (MQ=255)                                                        tGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCt                                                                                                    <  2:233379/139‑1 (MQ=255)                                                            aCATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGatat                                                                                     <  2:27526/150‑1 (MQ=255)                                                            aCATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGatat                                                                                     <  1:109940/150‑1 (MQ=255)                                                               acggcgcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATcc                                                                                   <  1:702092‑M1/63‑1 (MQ=255)                                                                    gcctttgtcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgtg                                                                              >  2:470843‑M1/83‑150 (MQ=255)                                                                          tGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCgg                                                                       <  2:335400/150‑1 (MQ=255)                                                                           tcgtgaagtggtgagggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCgg                                                                       >  2:702092‑M1/76‑150 (MQ=255)                                                                            cTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATcc                                                                                   <  1:553705/136‑1 (MQ=255)                                                                            cTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATcc                                                                                   >  2:553705/1‑136 (MQ=255)                                                                               aTGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATg                                                                  <  1:229348/150‑1 (MQ=255)                                                                                        agggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgtg                                                                              <  1:413901‑M1/68‑1 (MQ=255)                                                                                        agggctgtcgacgttgacagcccgggatgaggtagatcagcaatttatgggccagctataccGGCCCTTTCGCGGGCATGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgtg                                                                              >  2:413901‑M1/63‑130 (MQ=255)                                                                                             cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGTgg                                                                       >  2:133604/1‑131 (MQ=255)                                                                                             cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGTgg                                                                       <  1:133604/131‑1 (MQ=255)                                                                                             cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCAt                                                                   <  1:239289/135‑1 (MQ=255)                                                                                             cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCAt                                                                   >  2:239289/1‑135 (MQ=255)                                                                                             cccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGcc                                                    >  2:110475/1‑150 (MQ=255)                                                                                             cccAGCAAAGCGCCTGGGAGAATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTGGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGcc                                                    <  2:217042/150‑1 (MQ=255)                                                                                              ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                   >  2:99478/1‑150 (MQ=255)                                                                                              ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                   <  1:588668/150‑1 (MQ=255)                                                                                              ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGACGGCGCGCGCTCCCCCACAGGTACTTCTCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                   <  1:87250/150‑1 (MQ=38)                                                                                              ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCCCATGGTGAGTGCGATGGAGACAGCCT‑TTCGCGGGCACGCCCGCTCCCACAGGTACTCCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                   <  2:370311/150‑1 (MQ=25)                                                                                                   cgttgacagcccgggatgaggtcgatcagcaatttattggctagctataccGGCCTCTTCGCGGGCACGCCAAGGCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGtat                                               >  1:47189‑M1/52‑150 (MQ=255)                                                                                                    aaGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAg                                             <  2:164301/150‑1 (MQ=255)                                                                                                          cTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCCTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTTGcc                                       >  1:149730/1‑150 (MQ=255)                                                                                                                       gTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCCTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGa                          >  1:501308/1‑150 (MQ=255)                                                                                                                            tcagcaatttatgggccagctataccGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgtg                                                                              <  2:116961‑M1/68‑1 (MQ=255)                                                                                                                            tcagcaatttatgggccagctataccGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCtgtg                                                                              >  1:116961‑M1/27‑94 (MQ=255)                                                                                                                            cACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTCCTGATCTaa                     >  2:179165/1‑149 (MQ=255)                                                                                                                                     gTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGc                             >  2:227773/1‑133 (MQ=255)                                                                                                                                     gTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGc                             <  1:227773/133‑1 (MQ=255)                                                                                                                                               t‑gtgCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAc  <  2:192363/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                CTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCATGCTGGAAATTGCCCCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAC  >  NC_002947/1899095‑1899386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.