New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156328 =	34 (0.810)	9 (0.260)	7/216	3.2	21.3%	intergenic (+25/‑191)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156401 =	39 (1.140)					intergenic (+98/‑118)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
Rejected: Coverage evenness skew score above cutoff.

CTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCC  >  NC_002947/1156187‑1156474                                                                                                                                              |                                                                                                                                                    cTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCgg                                                                                                                                             <  1:548125/150‑1 (MQ=255)       ttGGGCATTGCGCGCAACATCGCTCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAAc                                                                                                                                       <  2:850699/150‑1 (MQ=255)       ttGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAAc                                                                                                                                       <  2:891730/150‑1 (MQ=255)                 cgcgcAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTAc                                                                                                                             <  1:709660/150‑1 (MQ=255)                            gCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGAATGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGt                                                                                                                 >  1:486672/1‑150 (MQ=255)                             cccATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTc                                                                                                                >  2:102527/1‑150 (MQ=255)                               cATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGTGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAg                                                                                                              <  2:668192/150‑1 (MQ=255)                                   gCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGttt                                                                                                          <  1:102527/150‑1 (MQ=255)                                      aTGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAAGGCGGGATGCGTGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGcg                                                                                                       >  2:727627/1‑150 (MQ=255)                                                   gAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCCCGTTAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCggg                                                                                          <  1:551469/150‑1 (MQ=255)                                                     gCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGtt                                                                                        <  2:580301/150‑1 (MQ=255)                                                               ccTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                              >  1:546372/1‑150 (MQ=255)                                                                      gAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGccc                                                                       <  1:911569/150‑1 (MQ=255)                                                                      gAGGGCGGGCGGCGGGGGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGccc                                                                       <  2:139773/150‑1 (MQ=255)                                                                                         cccTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGGGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGt                                                    >  2:695805/1‑150 (MQ=255)                                                                                          ccTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGTGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                          >  1:992715/1‑127 (MQ=255)                                                                                          ccTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGTGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                          <  2:992715/127‑1 (MQ=255)                                                                                             gTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                              >  1:247165/1‑120 (MQ=255)                                                                                             gTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                              <  2:247165/120‑1 (MQ=255)                                                                                             gTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACt                                                >  2:152650/1‑150 (MQ=255)                                                                                              tATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTg                                               >  1:939621/1‑150 (MQ=255)                                                                                                  ggCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTTTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCg                                           <  2:180234/149‑1 (MQ=255)                                                                                                      gcgGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGa                                       <  2:973462/150‑1 (MQ=255)                                                                                                                gATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCa                                                  >  2:994516/1‑129 (MQ=255)                                                                                                                gATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCa                                                  <  1:994516/129‑1 (MQ=255)                                                                                                                gATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtc                             <  1:152650/150‑1 (MQ=255)                                                                                                                 aTTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtcg                            >  2:699905/1‑150 (MQ=255)                                                                                                                 aTTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtcg                            >  1:59842/1‑150 (MQ=255)                                                                                                                               gTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGATCAAAAGGCGTACCAAAAGCGG‑TTGCGTCGTAGGAGCGGTTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCCTCCTTCGTGACATc              >  1:708034/1‑150 (MQ=25)                                                                                                                                          ggCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAaga                                                                            >  2:237001/1‑77 (MQ=255)                                                                                                                                          ggCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAaga                                                                            <  1:237001/77‑1 (MQ=255)                                                                                                                                          ggCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCgtcgtc                          <  2:322909/127‑1 (MQ=255)                                                                                                                                          ggCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCgtcgtc                          >  1:322909/1‑127 (MQ=255)                                                                                                                                           gCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGAcccc  >  2:734795/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                    CTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACG‑ACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCC  >  NC_002947/1156187‑1156474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.