| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5477178 | 22 (0.520) | 13 (0.450) | 13/184 | 1.3 | 41.8% | intergenic (+43/+69) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | = 5477195 | 21 (0.720) | intergenic (+60/+52) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
TGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAG > NC_002947/5477046‑5477336 | tggtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTAt < 2:408836/150‑1 (MQ=255) tggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgt > 2:550831‑M2/1‑147 (MQ=255) ggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgta > 2:154139‑M2/1‑146 (MQ=255) gtTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgg > 2:616934‑M2/1‑139 (MQ=255) ttGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTCAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcggg > 1:832530‑M2/1‑138 (MQ=255) ttGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcggg > 1:456356‑M2/1‑138 (MQ=255) ggCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttac > 2:317063‑M2/1‑133 (MQ=255) gCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttac < 1:189890‑M2/131‑18 (MQ=255) gCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttac > 2:189890‑M2/1‑114 (MQ=255) atgcGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCAt > 1:1036307/1‑150 (MQ=255) gTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAgg < 1:148581/134‑1 (MQ=255) gTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAgg > 2:148581/1‑134 (MQ=255) aaTATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcg > 2:597755‑M2/1‑68 (MQ=255) aaTATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcg < 1:597755‑M2/78‑11 (MQ=255) gCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCG‑‑T‑GCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTgg < 2:192532/150‑1 (MQ=11) gCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTgg > 1:68033/1‑150 (MQ=255) ccTGTGCCGGCCTATTCGCGGGTAAAATAGCTCCTACGATAAGCGCGATCCCG‑‑T‑GCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGa > 1:192532/1‑150 (MQ=11) cGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGaa < 2:452330/96‑1 (MQ=255) cGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGaa > 1:452330/1‑96 (MQ=255) gCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaac > 2:986567‑M2/1‑46 (MQ=255) gCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaac < 1:986567‑M2/111‑66 (MQ=255) ccTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGaa > 1:364067/1‑105 (MQ=255) ccTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGaa < 2:364067/105‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCgc > 1:164434/1‑150 (MQ=255) ggTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgc < 2:461714‑M2/150‑116 (MQ=255) ggTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCtgt > 1:868505/1‑150 (MQ=255) cccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaa < 1:307586‑M2/150‑122 (MQ=255) cccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa > 1:637231/1‑150 (MQ=255) ccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaac < 2:858893‑M2/150‑123 (MQ=255) ccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCt < 1:737224/99‑1 (MQ=255) ccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCt > 2:737224/1‑99 (MQ=255) ccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTc < 2:534437/119‑1 (MQ=255) ccGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTc > 1:534437/1‑119 (MQ=255) cGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaatatcaatattgatacctgaccaacgcctgcggcaac > 1:263327‑M2/1‑27 (MQ=255) cGCTCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaatatcaatattgatacctgaccaacgcctgcggcaac < 2:263327‑M2/104‑78 (MQ=255) gCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCg > 1:199961/1‑150 (MQ=255) tCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgac > 2:614007‑M2/1‑24 (MQ=255) tCCTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgac < 1:614007‑M2/85‑62 (MQ=255) ccTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccag < 2:403250‑M2/150‑128 (MQ=255) cTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccagc > 2:307586‑M2/1‑22 (MQ=255) cTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccg > 2:441817‑M2/1‑22 (MQ=255) cTACG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccg < 1:441817‑M2/53‑32 (MQ=255) cG‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccagccac > 1:461714‑M2/1‑19 (MQ=255) g‑‑CA‑CGGGATCGCGCTTATcgtaggagcgggtttacccgcgaataggccggcacaggcaacatcaatattgatacctgaccaacgcctgcggcaacgcatgcatggcgaagaacgccagcagcgccacgcatgccggcaacaccagccacc < 2:85853‑M2/150‑133 (MQ=255) g‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTcag > 2:513134/1‑150 (MQ=255) aTCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTcc > 1:490437/1‑150 (MQ=255) cgcgCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAg < 2:164434/150‑1 (MQ=255) | TGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑CA‑CGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAG > NC_002947/5477046‑5477336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |