| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 564,380:1 | +A | 14.6% | intergenic (+29/‑144) | rplQ → / → katA | 50S ribosomal protein L17/catalase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 564,380 | 1 | . | A | 14.6% | 158.0 / 24.2 | 48 | intergenic (+29/‑144) | rplQ/katA | 50S ribosomal protein L17/catalase |
| Reads supporting (aligned to +/- strand): ref base . (17/24); new base A (3/4); total (20/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
CCGTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGGAGAGCCCATGA > NC_002947/564231‑564527 | ccGTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGc < 1:967106/150‑1 (MQ=255) gTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑Ct > 2:885373/1‑150 (MQ=255) gcTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCgg > 1:408616/1‑150 (MQ=255) tGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGtttttt < 1:496969/150‑1 (MQ=255) tGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAAAAACCCGGGCACTAG‑GCCCGGttttct < 1:1457360/150‑3 (MQ=255) gcgcATCCTGAAGTGCGGTTTCCGCTCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTg > 2:1380854/1‑150 (MQ=255) tGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACa > 1:65640/1‑150 (MQ=255) gAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACAt < 2:65640/150‑1 (MQ=255) tCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTAt < 1:1110116/150‑1 (MQ=255) gcgcTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGccc > 1:452113/1‑118 (MQ=255) gcgcTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGccc < 2:452113/118‑1 (MQ=255) ggCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCTGTTTTTTGTTTATACATCTATTGTTTATTTCTATTg < 2:491399/150‑1 (MQ=255) gCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTa < 2:333224/140‑1 (MQ=255) gCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTa > 1:333224/1‑140 (MQ=255) gCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGa < 1:620204/150‑1 (MQ=255) gACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATg < 1:885373/150‑1 (MQ=255) aaCGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATTTaa < 2:405972/150‑1 (MQ=255) aaCGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATCGTTTATTTCGATTGATGTaa < 2:920102/150‑1 (MQ=255) cGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTcc < 1:1193210/150‑1 (MQ=255) cGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTcc < 1:1047062/150‑1 (MQ=255) cGAGCTGGTTGATCGTCCGGTCGGCGGTGCAGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTcc < 1:1209449/150‑1 (MQ=255) aGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCt < 2:685856/150‑1 (MQ=255) tGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTa > 2:1207657/1‑150 (MQ=255) gATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCtt < 1:1207657/150‑1 (MQ=255) tCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGc > 1:941797/1‑150 (MQ=255) tGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATActctct < 2:1315148/150‑1 (MQ=255) cTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATActctctct > 1:896797/1‑150 (MQ=255) tAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACa > 2:539123/1‑150 (MQ=255) tAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAAAAAACCGGGCACTAG‑GCCCGGTTTTCTGta > 2:838744/1‑65 (MQ=17) tAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAAAAAACCGGGCACTAG‑GCCCGGTTTTCTGta > 2:838473/1‑65 (MQ=17) tAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAAAAAACCGGGCACTAG‑GCCCGGTTTTCTGta < 1:838744/66‑2 (MQ=17) tAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAAAAAACCGGGCACTAG‑GCCCGGTTTTCTGta < 1:838473/66‑2 (MQ=17) gctgctGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGa < 2:896797/150‑1 (MQ=255) tAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTaa > 1:1015665/1‑110 (MQ=255) tAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTaa < 2:1015665/110‑1 (MQ=255) tAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGc < 1:539123/150‑1 (MQ=255) ttCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGaa > 1:163155/1‑150 (MQ=255) tctgCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCg > 1:971508/1‑150 (MQ=255) cTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATActctct > 1:1182092/1‑115 (MQ=255) cTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGCTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATActctct < 2:1182092/115‑1 (MQ=255) aacaaaaaaCCGGGCACTAG‑GCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGaa < 1:1094786/135‑1 (MQ=255) aaCAAAAAACCGGGCACTAG‑GCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGaa > 2:1094786/2‑140 (MQ=255) gAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCCCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGgaga < 2:941797/150‑1 (MQ=255) aaaaCCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAAt > 1:574004/1‑144 (MQ=255) aaaaCCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAAt < 2:574004/144‑1 (MQ=255) aaCCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGGagag > 1:945171/1‑148 (MQ=255) aaCCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGGagag < 2:945171/148‑1 (MQ=255) aaCCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGGAGAGcc > 1:1633294/1‑150 (MQ=255) ggC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGGAGAGCCCATGa < 1:914371/150‑1 (MQ=255) | CCGTCAGGGCGGCTACCTGCGCATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCGCCTATGGCGTATGTCGAGCTGGTTGATCGTCCGGTCGGCGGTGCTGTAGAAGCTGCTGAGTAAGACGTTCTGTCTGCTACAGAAAACCGGGC‑CTAGTGCCCGGTTTTTTGTTTATACATCTATTGTTTATTTCTATTGATGTAAGTCATGTAATGAATTTGTCCCTGTAATCTTGCTCGTCAATACTCTCTCTACAGCCGATTAGCCGGCCCTTGAAGACCGAAATGGAGAGCCCATGA > NC_002947/564231‑564527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |