| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,355,480:1 | +T | 8.6% | coding (5/264 nt) | PP_1180 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,355,480 | 1 | . | T | 8.6% | 265.6 / 19.8 | 70 | coding (5/264 nt) | PP_1180 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (34/30); new base T (3/3); total (37/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.65e-01 | |||||||||||
GGCCTGCGGCACCTGGGCCTGCGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAGGCCTGGCCTGCAACACCCAT > NC_002947/1355332‑1355629 | ggcCTGCGGCACCTGGGCCTGCGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAatgca‑t < 1:1280287/150‑1 (MQ=255) gCACCTGGGCCTGCGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATcc > 1:383688/1‑150 (MQ=255) aCCTGGGCCTGGGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTACCCAGGTCCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTTCAGTTGCTCGATAACGTCGCGA‑‑CGTTGCCCGATGCA‑TGCGCagctcc > 2:308453/1‑145 (MQ=255) tGGGCCTGCGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGCCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATccgcccg > 1:818883/1‑150 (MQ=255) gggCCTGCGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGC‑ATGCATTGCGCATccccgcga < 1:40647/150‑7 (MQ=255) ttCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTAcc > 2:1244521/1‑150 (MQ=255) tcGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGAc > 1:629768/1‑150 (MQ=255) cgcgAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACt < 1:1586432/150‑1 (MQ=255) gcgAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCAAAGTTGCGATATTGTTCAGGTGCCTTATGGGCGCTCACCGTTCCGTGTACTTTCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGACGTACCGACtt > 2:663193/1‑150 (MQ=255) gcgAGTCGTGGCGGTTTGCATGGGTGGGTGTCTCCCCAGTAACTATACTGTTCAGGCGCCTTATGGCAGCCCACCGTTACGTTGACTTGCTCGATAACGTAGCAG‑‑CGTTGTGGAGTGCA‑AGAGTATCCACACGCGCGGGGGTACCgtttt > 2:691193/1‑146 (MQ=255) gtgtCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACa < 1:1158338/150‑1 (MQ=255) tttGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAg < 1:1244521/150‑1 (MQ=255) cgCATCGGTGGGTGTATCACCGGGTTATATATTGGACAGGCGCTTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGa < 1:691193/149‑1 (MQ=255) gCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGaa < 2:790271/150‑1 (MQ=255) cATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAAt > 1:943216/1‑150 (MQ=255) tgggtgggTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATaa < 2:279254/150‑1 (MQ=255) gggtgggtGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGTCTTCGGGATAGACTCAGGAATAAg < 2:1335189/150‑1 (MQ=255) gggtgggtGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAg < 1:308453/150‑1 (MQ=255) tgggtgTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAgggg < 2:629768/150‑1 (MQ=255) tcCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAggg > 1:1499242/1‑141 (MQ=255) tcCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAggg < 2:1499242/141‑1 (MQ=255) tcCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCt > 2:1165817/1‑150 (MQ=255) tcCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCt > 2:1076603/1‑150 (MQ=255) ccACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCTCGATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCtt < 2:1621922/150‑1 (MQ=255) acaGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGc < 1:1076603/150‑1 (MQ=255) acaGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCGCGCGGGCGGATGCGC‑ATGCATTGCGCa > 2:204445/1‑92 (MQ=25) acaGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCGCGCGGGCGGATGCGC‑ATGCATTGCGCa < 1:204445/92‑1 (MQ=25) gTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGa > 1:1461182/1‑150 (MQ=255) ttCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGaa > 1:739586/1‑150 (MQ=255) aGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGT‑‑GGATGCGCAATGCA‑TGCGCATCAGCCCGCGCGGGCGTACCGACTTCGGGACAGAATGAGGAATAAGGGGCAATGGCGTGCCGGTGCCTGGCCGGAgac > 1:491640/1‑148 (MQ=255) aGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTc > 2:1537549/1‑150 (MQ=255) gcgcCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCaa > 2:1301968/1‑150 (MQ=255) gcgcCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCaa > 2:1262578/1‑150 (MQ=255) cgcCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCaaa < 1:1262578/150‑1 (MQ=255) ccTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGa < 1:514859/97‑1 (MQ=255) ccTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGa > 2:514859/1‑97 (MQ=255) aTGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCg > 1:1166768/1‑90 (MQ=255) aTGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCg < 2:1166768/90‑1 (MQ=255) aTGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGa < 1:581499/104‑1 (MQ=255) aTGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGa > 2:581499/1‑104 (MQ=255) gggCGCCTACCGTTCCGTCCACTTGCTCGAGAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGCCTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTgg < 2:701252/150‑1 (MQ=255) gggCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTgg > 2:616637/1‑150 (MQ=255) gggCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCCGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTgg < 1:425689/150‑1 (MQ=255) ggCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTggg > 1:1166037/1‑150 (MQ=255) cccACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGaa > 1:1322318/1‑131 (MQ=255) cccACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGaa < 2:1322318/131‑1 (MQ=255) aCCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATg < 1:1068269/107‑1 (MQ=255) aCCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATg > 2:1068269/1‑107 (MQ=255) cGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAAc > 1:943930/1‑150 (MQ=255) gTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACt > 1:791238/1‑150 (MQ=255) tCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTg < 1:616637/150‑1 (MQ=255) aCTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTg > 2:1252736/1‑150 (MQ=255) aCTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTg < 2:791238/150‑1 (MQ=255) cTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACGTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGAt < 1:1252736/150‑1 (MQ=255) tgcaTAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGGATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATg < 2:312978/147‑1 (MQ=255) gATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGc < 2:117437/93‑1 (MQ=255) gATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGc > 1:117437/1‑93 (MQ=255) aTAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGt < 2:943930/150‑1 (MQ=255) cctcaagg‑‑ggATGCGCAATGCA‑TGCGCATCCGGCAGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCCCCCTGGCCGAAGTCAAGTGTTCTGGGCCGAGCCAGAAAACTGTTGCTGCTGGGTGCCa > 2:380995/7‑150 (MQ=255) gcgggcggATGCGC‑ATGCATTGCGCATC‑‑CCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGt > 1:771078/7‑131 (MQ=38) gcgggcggATGCGC‑ATGCATTGCGCATC‑‑CCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGt < 2:771078/125‑1 (MQ=38) gcgG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGa > 2:1069831/1‑58 (MQ=255) gcgG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGa < 1:1069831/58‑1 (MQ=255) ggATGCGC‑ATGCATTGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAggcctggc > 2:586796/1‑150 (MQ=255) aTGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAggcctggcct > 1:1066104/1‑150 (MQ=255) aTGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAggcctggcct < 1:1165817/150‑1 (MQ=255) cgcAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGAt < 2:159829/129‑1 (MQ=255) cgcAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGAt > 1:159829/1‑129 (MQ=255) gcAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAGGCCTGGCCTGCaa > 2:224218/1‑150 (MQ=255) aaTGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGc < 2:1494729/83‑1 (MQ=255) aaTGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGc > 1:1494729/1‑83 (MQ=255) atgcattgCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGa > 1:1503674/1‑46 (MQ=255) atgcattgCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGa < 2:1503674/46‑1 (MQ=255) a‑tgcGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGc > 1:1372697/1‑117 (MQ=255) a‑tgcGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGc < 2:1372697/117‑1 (MQ=255) a‑tgcGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAGGCCTGGCCTGCAACACCCAt < 2:1461182/150‑1 (MQ=255) | GGCCTGCGGCACCTGGGCCTGCGGGTTCTCGCGAGTCGTGTCGGTTTGCATGGGTGGGTGTCTCCACAGTTTCTATATTGTTCAGGCGCCTTATGGGCGCCCACCGTTCCGTCCACTTGCTCGATAACCTCGCGG‑‑GGATGCGCAATGCA‑TGCGCATCCGCCCGCGCGGGCGTACCGACTTCGGGACAGACTCAGGAATAAGGGGCAATGGCTTGCCGCTCCCTGGCCGAAGTCAAAGGTTCTGGGCCGAGCCCAAAAACTGTTGCTGATGGGTGCCAGGCCTGGCCTGCAACACCCAT > NC_002947/1355332‑1355629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |