| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,408,096:1 | +T | 6.3% | coding (491/615 nt) | PP_3021 ← | LysE family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,408,096 | 1 | . | T | 6.3% | 318.8 / 15.3 | 79 | coding (491/615 nt) | PP_3021 | LysE family transporter |
| Reads supporting (aligned to +/- strand): ref base . (34/40); new base T (2/3); total (36/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.15e-01 | |||||||||||
GTCGACATGCGCACCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGAGGATGCCAGACAAGAAGC > NC_002947/3407947‑3408243 | gTCGACATGCGCACCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCa > 1:1418022/1‑150 (MQ=255) tCGACATGCGCACCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑c < 2:1356377/150‑1 (MQ=255) gACATGCGCACCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGACCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑Cgg > 2:426895/1‑150 (MQ=255) tGCGCACCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGAc < 1:686280/150‑1 (MQ=255) cgaaCCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCa < 1:1243619/147‑1 (MQ=255) cTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAg < 2:1248676/150‑1 (MQ=255) tGCAACAAGTCAGCCCCGGGCCCGCTGCAGCAACCACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTc < 2:1320224/150‑1 (MQ=255) tGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTCGCCG‑TGGCCATCGGCAACCAGcgggta < 2:678029/150‑6 (MQ=255) gCAACAAGTCAGCCCCGGGACAGATGCAGCAACAACGCCACCACCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTcc < 2:1186132/150‑1 (MQ=255) aacaaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCa > 1:1155633/1‑150 (MQ=255) aacaaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCa > 1:1454845/1‑150 (MQ=255) aacaaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCa < 1:584833/150‑1 (MQ=255) aaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCaa < 1:7962/141‑1 (MQ=255) aaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCaa > 2:7962/1‑141 (MQ=255) aaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCagag > 2:31445/1‑150 (MQ=255) aaGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCagag > 1:706265/1‑150 (MQ=255) aGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCACGa < 1:1643097/150‑1 (MQ=255) ccccGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACg > 2:929493/1‑150 (MQ=255) cccGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGa < 1:426895/150‑1 (MQ=255) cccGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTCGCCG‑TGGCCATCGGCAACCAGcg < 2:966898/132‑2 (MQ=255) cccGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTCGCCG‑TGGCCATCGGCAACCAGcg > 1:966898/1‑131 (MQ=255) cAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGaa < 1:214762/150‑1 (MQ=255) gcaACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATa < 1:1635256/150‑1 (MQ=255) gcaACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGAAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATa > 1:1469135/1‑150 (MQ=255) aacaacGCCCCCGCCGACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAgc < 2:1146901/150‑1 (MQ=255) aacaacGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAgc > 2:121801/1‑150 (MQ=255) aacGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGcgcg < 1:993490/150‑1 (MQ=255) acGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGt > 1:943509/1‑150 (MQ=255) ccccGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGc > 1:1575626/1‑150 (MQ=255) cAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGtttt > 2:266101/1‑150 (MQ=255) aaCATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTc < 2:1155633/150‑1 (MQ=255) cACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGcc < 1:266101/150‑1 (MQ=255) aCCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCg > 2:689558/1‑150 (MQ=255) cAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCggg < 1:121801/150‑1 (MQ=255) gCATGACCCCCGAGGCCCGCTCCACCCACGCCAGGCTGCGGGCGAAGCGCCGCACTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGACCATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGc > 2:385030/1‑150 (MQ=255) gACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGAc < 2:706265/150‑1 (MQ=255) gACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGAAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGAc < 2:1469135/150‑1 (MQ=255) ccccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCt > 2:493267/1‑150 (MQ=255) ccccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCt > 1:1063528/1‑150 (MQ=255) ccccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCt > 2:974777/1‑150 (MQ=255) cccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGtt > 2:343789/1‑129 (MQ=255) cccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGtt < 1:343789/129‑1 (MQ=255) ccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGTTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCGTAGCGCGGGGGCTGTTTTCCAGCCGGAGCTGACGCTgg > 2:591136/1‑150 (MQ=255) ccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTgg > 2:271732/1‑150 (MQ=255) ccGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTgg > 1:153938/1‑150 (MQ=255) cGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGc < 1:929493/150‑1 (MQ=255) aGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGa < 2:1454845/150‑1 (MQ=255) tCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTg > 1:555333/1‑150 (MQ=255) tCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTg < 2:555333/150‑1 (MQ=255) cAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAAGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCgg < 1:1347169/125‑1 (MQ=255) cAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAAGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCgg > 2:1347169/1‑125 (MQ=255) cACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCTGCTGGTCGCCG‑TGGCCATCGGCAACCAGcgg < 1:1530595/65‑3 (MQ=9) cACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCTGCTGGTCGCCG‑TGGCCATCGGCAACCAGcgg > 2:1530595/1‑63 (MQ=9) cACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAgg < 2:153938/150‑1 (MQ=255) aCGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGc < 2:1227504/150‑1 (MQ=255) cAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTc > 2:1358540/1‑109 (MQ=255) cAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTc < 1:1358540/109‑1 (MQ=255) tGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGc < 1:394486/145‑1 (MQ=255) tGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGc > 2:394486/1‑145 (MQ=255) tGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCCGGCATAGa > 2:304601/1‑150 (MQ=255) gCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGaa < 2:1063528/150‑1 (MQ=255) gCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCTCTAGCGCGCAGGCCGTTCACCAGCCGGGGCGGGCGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAgc < 1:31445/150‑1 (MQ=255) gCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAgc < 1:493267/150‑1 (MQ=255) aGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTg < 2:525599/113‑1 (MQ=255) aGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTg > 1:525599/1‑113 (MQ=255) aGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTg > 1:1076616/1‑125 (MQ=255) aGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTg < 2:1076616/125‑1 (MQ=255) ccgcAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCgggg < 2:137887/100‑1 (MQ=255) ccgcAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCgggg > 1:137887/1‑100 (MQ=255) cgcAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGTCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTg < 1:385030/150‑1 (MQ=255) gcAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTgg < 2:1575626/150‑1 (MQ=255) cccGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGa < 1:689558/150‑1 (MQ=255) cccGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGa < 1:1408005/150‑1 (MQ=255) ccGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGAg > 1:126341/1‑150 (MQ=255) cGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGt > 1:1567760/1‑77 (MQ=255) cGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGt < 2:1567760/77‑1 (MQ=255) cGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTgg < 2:702281/111‑1 (MQ=255) cGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTgg > 1:702281/1‑111 (MQ=255) ccA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGtt > 1:240350/1‑130 (MQ=255) ccA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGtt < 2:240350/130‑1 (MQ=255) ccA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGAGGATGCCAGACAAGAAGc > 2:1580074/1‑150 (MQ=255) a‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGAGGATGCCAGACaag > 1:1027219/1‑144 (MQ=255) a‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGAGGATGCCAGACaag < 2:1027219/144‑1 (MQ=255) | GTCGACATGCGCACCTTGCAACAAGTCAGCCCCGGGCCAGATGCAGCAACAACGCCCCCGCCAACATCACCAGCATGACCCCCGAGGCCCGCTCCAGCCACGCCAGGCTGCGGGCGAAGCGCCGCAGTACCCGCTGGTTGCCGATGGCCA‑CGGCGACCAGCAAGTCCCAGAGCAGGACGATGCTGAACATCCATAGCGCGTAGGCCGTTTTCCAGCCGGGGCTGACGCTGGCGACCATGCTGGCCAGGCTGGCATAGAACAGCGCGTTCTTGGGGTTGAGGATGCCAGACAAGAAGC > NC_002947/3407947‑3408243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |