Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,798,742:1 | +A | 8.0% | coding (201/831 nt) | PP_3358 ← | hydroxycinnamoyl‑CoA hydratase‑lyase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,798,742 | 1 | . | A | 8.0% | 191.2 / 11.6 | 50 | coding (201/831 nt) | PP_3358 | hydroxycinnamoyl‑CoA hydratase‑lyase |
Reads supporting (aligned to +/- strand): ref base . (20/26); new base A (2/2); total (22/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
ACCAGCCGTTGACCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGC > NC_002947/3798594‑3798890 | aCCAGCCGTTGACCATGGCGATGGTCGGTTTGGCATACAGNCGCAGCNACTTCCATTGCCATTGCGAGGCTTCGCGACGAACCGTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCcggcg‑g > 1:1336237/1‑150 (MQ=255) ccAGCCGTTGACCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATACCGGCG‑Gt > 2:529447/1‑150 (MQ=255) gCCGTTGACCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCa < 1:1494645/150‑1 (MQ=255) gTTGACCATGGCGCTGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTGCTCCTTCAGGTCCATGCCGGCG‑GTCCAGGa < 2:1611918/150‑1 (MQ=255) gACCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTc < 2:1401619/150‑1 (MQ=255) aCCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTACTTGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCg > 1:364655/1‑150 (MQ=255) cATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGcc > 1:1049398/1‑150 (MQ=255) aTGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCg > 1:1473021/1‑150 (MQ=255) gATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCGTGCCGGCGAGTCCTGGAC‑CGCCgg > 1:1416/1‑146 (MQ=255) gATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCGTGCCGGCGAGTCCTGGAC‑CGCCgg < 2:1416/146‑1 (MQ=255) ggCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAg < 1:1095667/150‑1 (MQ=255) ggCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAg < 1:1587299/150‑1 (MQ=255) gCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc < 1:662800/130‑1 (MQ=255) gCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc > 2:662800/1‑130 (MQ=255) aTACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCAc > 2:623395/1‑150 (MQ=255) gACGCATCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcag > 2:1002252/1‑150 (MQ=255) gACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGa < 2:1361145/118‑1 (MQ=255) gACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGa > 1:1361145/1‑118 (MQ=255) agcaACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagcgtca < 2:1018211/150‑1 (MQ=255) cTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCaa > 2:175740/1‑126 (MQ=255) cTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCaa < 1:175740/126‑1 (MQ=255) cattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAgg < 1:656230/150‑1 (MQ=255) cGAGGCTTCGCGACTAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTc < 2:860525/150‑1 (MQ=255) cTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCa > 1:1421836/1‑150 (MQ=255) acgaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGAc < 1:623395/150‑1 (MQ=255) acgaATCTTCTCCTTGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCAATTTGCTGGCGAACGGCT‑GTCCAGGCCCCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGAc < 1:529447/150‑1 (MQ=255) ttttCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCACCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTcc > 2:266701/1‑150 (MQ=255) tttCCTTTAGGATGTCCTGGTCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTccc < 2:721445/150‑1 (MQ=255) tGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCat < 2:598304/79‑2 (MQ=37) tGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCat > 1:598304/1‑78 (MQ=37) gaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAg > 1:1369311/1‑150 (MQ=255) gaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCACCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAg < 1:266701/150‑1 (MQ=255) aggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAgg < 2:1336237/150‑1 (MQ=255) ggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAggg < 2:1049398/150‑1 (MQ=255) aTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTg < 2:1473021/150‑1 (MQ=255) aTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTg < 2:364655/150‑1 (MQ=255) aTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTg < 1:357368/150‑1 (MQ=255) cTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGttt > 1:123104/1‑150 (MQ=255) cTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGttt > 1:891730/1‑150 (MQ=255) cTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGttt > 2:264684/1‑150 (MQ=255) ggAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCca > 1:437936/1‑68 (MQ=255) ggAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCca < 2:437936/68‑1 (MQ=255) tACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCgg < 2:1566097/111‑1 (MQ=255) tACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCgg > 1:1566097/1‑111 (MQ=255) ccTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGa < 2:891730/150‑1 (MQ=255) cTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGAc > 1:525449/1‑96 (MQ=255) cTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGAc < 2:525449/96‑1 (MQ=255) ttCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAgg < 2:1369311/150‑1 (MQ=255) tCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAggg > 1:627753/1‑150 (MQ=255) gTCCATGCCGGCG‑GGCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAc > 1:1542911/1‑150 (MQ=255) gCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGc < 1:1002252/150‑1 (MQ=255) cg‑gTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGc < 1:264684/150‑1 (MQ=255) | ACCAGCCGTTGACCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGC > NC_002947/3798594‑3798890 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |