| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 258625 | 51 (0.850) | 8 (0.140) | 8/232 | NT | 12.3% | coding (159/1407 nt) | PP_0207 | nitrate ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 258642 | 65 (1.120) | coding (176/1407 nt) | PP_0207 | nitrate ABC transporter substrate‑binding protein | |||||
GCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/258540‑258625‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacTTGCCG‑TCGTGCGGCAGGTACTTGTCCAGCAGGCCCAGCTCACGGATCAGCAGGCCACCGGTGGCGCAGTTGATGGTGGTGTCCTGGGTGCCGATGGCGATGCGTATGGTTTCGGCGCTGGCGTTCAGGCCAGTGAGCGCCAGCGCGAG < NC_002947/258642‑258494 GCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCG‑TCGTGCGGCA > 1:462133/1‑102GCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCG‑TCGTGCGGCA < 2:462133/102‑1 AGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACTTGCCG‑TCGTGCGGCAGGTACTTGT > 1:695001/1‑93 AGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACTTGCCG‑TCGTGCGGCAGGTACTTGT < 2:695001/93‑1 CATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCG‑TCGTGCGGCAGG < 1:587460/76‑1 CATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCG‑TCGTGCGGCAGG > 2:587460/1‑76 TGCTGGACAAGTACCTGCCGCACG‑ACGGCAAGTACTTGTCCAGCAGGCCCAGCTCACGGATCAGCAGGCCACCGGTGGCGCAGTTGATGGTGGTGTCCTGGGTGC < 1:80197/105‑1 TGCTGGACAAGTACCTGCCGCACG‑ACGGCAAGTACTTGTCCAGCAGGCCCAGCTCACGGATCAGCAGGCCACCGGTGGCGCAGTTGATGGTGGTGTCCTGGGTGC > 2:80197/1‑105 CTTGCCG‑TCGTGCGGCAGGTACTTGTCCAGCAGGCCCAGCTCACGGATCAGCAGGCCACCGGTGGCGCAGTTGATGGTGGTGTCCTGGGTGCCGATGGCGATGCGTATGGTTTCGGCGCTGGCGTTCAGGCCAGTGAGCGCCAGCGCGAG > 2:243519/1‑150 GCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/258540‑258625‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacTTGCCG‑TCGTGCGGCAGGTACTTGTCCAGCAGGCCCAGCTCACGGATCAGCAGGCCACCGGTGGCGCAGTTGATGGTGGTGTCCTGGGTGCCGATGGCGATGCGTATGGTTTCGGCGCTGGCGTTCAGGCCAGTGAGCGCCAGCGCGAG < NC_002947/258642‑258494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |