New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	316005 =	50 (0.840)	7 (0.140)	7/204	NT	14.4%	intergenic (+17/+66)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
	?	NC_002947	316053 =	41 (0.810)					intergenic (+65/+18)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein

GGCGTGGGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/316171‑316005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaaggccgctcccacaAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCCAG  >  NC_002947/316053‑316200                                                                                                                                                                                                                                                                                                                             GGCGTGGGCGGGCACTGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGTGAGCGGCCTTGCGGCCCTTTCGCGAC                                                                                                                                                                       <  2:4877/150‑1       GGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGG                                                                                                                                                                 <  2:404545/150‑1            GCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCTGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAG                                                                                                                                                                  <  1:1504804/144‑1            GCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCT                                                                                                                                                            >  2:724509/1‑150            GCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAG                                                                                                                                                                  >  2:1504804/1‑144             CACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTC                                                                                                                                                           >  2:582287/1‑150                                                                                              ACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCT                                                                                                                                                            <  1:1468669/68‑1                                                                                              ACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCT                                                                                                                                                            >  2:1468669/1‑68                                                                                                                      TTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTG                                                                                                               <  1:581886/89‑1                                                                                                                      TTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTG                                                                                                               >  2:581886/1‑89                                                                                                                               GCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGT                                                                                                                            >  1:1380106/1‑67                                                                                                                               GCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGT                                                                                                                            <  2:1380106/67‑1                                                                                                                                           CCCTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGC                             >  2:1261875/1‑150                                                                                                                                             CTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTA                                                                                                                  <  2:625842/63‑1                                                                                                                                             CTTTCGCGACGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTA                                                                                                                  >  1:625842/1‑63                                                                                                                                                      CGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCTCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGT                  >  1:1348297/1‑150                                                                                                                                                       GCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTC                 <  1:702069/150‑1                                                                                                                                                         AAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAG               >  2:1247415/1‑150                                                                                                                                                         AAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAG               <  2:1571779/150‑1                                                                                                                                                         AAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCCTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAG               >  1:1592212/1‑150                                                                                                                                                                 TCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCT       <  1:644620/150‑1                                                                                                                                                                 TCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCT       >  2:1505206/1‑150                                                                                                                                                                   CCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCC     >  1:1489335/1‑150                                                                                                                                                                     ACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCCA   >  2:1091000/1‑150                                                                                                                                                                     ACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCCA   <  2:1536243/150‑1                                                                                                                                                                      CAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCCAG  <  1:805701/150‑1                                                                                                                                                                      CAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCCAG  <  1:1505206/150‑1                                                                                                                                                                      CAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTG                                           <  2:1142254/109‑1                                                                                                                                                                      CAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTG                                           >  1:1142254/1‑109                                                                                                                                                                      CAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGG                                                                                          <  1:1016258/62‑1                                                                                                                                                                      CAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGG                                                                                          >  2:1016258/1‑62                                                                                                                                                                                                                                                                                                                             GGCGTGGGCGGGCACGGTTGACGTTGGAGACCACGGTGAGCAATGACGGCAGTGACGAGCCGGCGGTGAGGTTCAGCGGCCAGTACGTTCTGCACCGCTAGTACGACTAACGCGGCCTTTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/316171‑316005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaaggccgctcccacaAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCCGCTGGTACAGGGTCAGGAACCGCTCCCAG  >  NC_002947/316053‑316200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.