| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 380836 = | 64 (1.070) | 8 (0.170) | 7/194 | NT | 16.2% | intergenic (+23/+86) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 380916 = | 31 (0.640) | intergenic (+103/+6) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
ATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/381001‑380836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaCTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCA > NC_002947/380916‑381058 ATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGA > 2:1121908/1‑150ATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGA > 1:825129/1‑150 GACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGG < 1:1014947/150‑1 GACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGG < 1:1608445/150‑1 CGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCC < 2:952665/150‑1 GGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCG > 2:699696/1‑150 TCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGT < 2:1394688/129‑1 TCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGT > 1:1394688/1‑129 CCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGC > 1:1583144/1‑100 CCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGC < 2:1583144/100‑1 ACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAT > 1:1629802/1‑146 ACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAT < 2:1629802/146‑1 ACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTAC > 1:254815/1‑87 ACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTAC < 2:254815/87‑1 CAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGGGGTCTACCG < 1:726943/106‑1 CAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGGGGTCTACCG > 2:726943/1‑106 CGCAGTCCTGAAGATAGCGATGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA < 1:1408502/79‑1 CGCAGTCCTGAAGATAGCGATGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA > 2:1408502/1‑79 gtcGCGGGCACGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCA > 1:81441/4‑150 GGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATG > 1:1515679/1‑143 GGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATG < 2:1515679/143‑1 GGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCAC > 1:221790/1‑127 GGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCAC < 2:221790/127‑1 GCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCG > 2:44511/1‑150 CGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGG < 2:1014947/150‑1 TGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCAATCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTC < 1:115318/150‑1 CCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGCCCATAGACGTCTACCGCCAGGCGGGACAGCTAGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTATCCCCCTGCACCGACAAGTCGCTGAGATTGACCAGGTTGCGGTCCA > 2:537021/1‑150 ACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGG > 2:468076/1‑140 ACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGG < 1:468076/140‑1 ATCAGACCAGCGCGGCGAGTGCCGAGCTGTCGCGCCTGGCGGTAGACCTCAATGGCCTGGTAGCCCGGTTCCGCACCTAGAAGCAGTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATG‑ACCCTGTGGGAGCGGGCGTGCCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/381001‑380836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaCTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGTTCACCAGGTTGCGGTCCA > NC_002947/380916‑381058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |