| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 401690 | 61 (1.020) | 5 (0.120) +GTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCAT |
5/164 | NT | 16.0% | intergenic (+214/+215) | PP_0334/PP_0335 | transposase/glutathione S‑transferase family protein |
| ? | NC_002947 | = 5033278 | 16 (0.270) | intergenic (+395/‑15) | PP_4435/PP_4437 | hypothetical protein/transposase | |||||
ATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/401560‑401690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGATGGTGATTCCTGGCGAGCGTCCAACGAGCGTTCCAACGACCCCGGTTTTTGCCAGTCC < NC_002947/5033278‑5033133 |||||||||||||||||||||||||||||||||||||| ATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTC > 1:1546212/1‑150ATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTC > 1:1546479/1‑150 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTT < 2:1423113/150‑1 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTACGACGAACTCACCTT > 2:455740/1‑150 CCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTC < 2:1495966/150‑1 CCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAAC < 1:1545481/150‑1 CTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTACCTCGTACTCACCTTCCGAACT > 1:497662/1‑150 TACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTC > 2:1352940/1‑150 CTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAA < 2:831168/115‑1 CTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAA > 1:831168/1‑115 GCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAAC > 2:87711/1‑93 GCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAAC < 1:87711/93‑1 TGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAc < 2:408929/66‑2 TGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAA > 1:408929/1‑66 AAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAA < 2:1017766/150‑1 AGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTT > 1:936608/1‑119 AGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTT < 2:936608/119‑1 ATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAA > 2:1546987/1‑52 ATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAA < 1:1546987/52‑1 TAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATT < 2:1069748/61‑1 TAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATT > 1:1069748/1‑61 AACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAA > 1:937915/1‑102 AACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAA < 2:937915/102‑1 GCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCACCGGACGCTTACGATGGTGATTCCTGGCGAGCGTCCAACGAGCGTTCCAACGACCCCGGTTTTTGCCAGTCC > 1:494020/1‑150 |||||||||||||||||||||||||||||||||||||| ATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/401560‑401690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGATGGTGATTCCTGGCGAGCGTCCAACGAGCGTTCCAACGACCCCGGTTTTTGCCAGTCC < NC_002947/5033278‑5033133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |