| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 458833 = | 64 (1.070) | 5 (0.090) | 4/218 | NT | 8.0% | intergenic (‑51/+113) | pqqC/pqqB | pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B |
| ? | NC_002947 | 458918 = | 57 (1.050) | intergenic (‑136/+28) | pqqC/pqqB | pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B | |||||
CGGGGCGTCGAAGTTGCCTTCGATGGCATGAGCATCGAGTTGTAAATACAGTCTGTGAGGCGACACCAGACCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/458990‑458833‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcccacaGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTGGATAAGTACCT > NC_002947/458918‑459064 CGGGGCGTCGAAGTTGCCTCCGATGGCATGAGCATCGAGTTGTAAATACAGTCTGTGAGGCGACACCAGACCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCG < 2:1266251/150‑1 CCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTT > 2:1336549/1‑150 GAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCCCCGGGGTTCGCGGGCACGTCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGCATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCC > 1:467547/1‑150 ATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCA < 1:1336549/150‑1 gtcAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAGGGTCTGGTGTCGC > 1:1291152/4‑80 GCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAGGGTCTGGTGTCGC < 2:1291152/80‑1 atgaCCGCTCACACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTTATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGT > 2:920797/5‑150 CCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTGGAT < 2:467547/150‑1 CCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTGGAT < 2:727898/150‑1 CGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGC > 2:1044334/1‑87 CGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGC < 1:1044334/87‑1 CCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTG < 1:222556/127‑1 CCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTG > 2:222556/1‑127 ACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTGGATAAGTACCT < 1:93552/150‑1 ACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTGGATAAGTACCT < 1:415534/150‑1 ACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGG < 1:291392/121‑1 ACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGG > 2:291392/1‑121 CGGGGCGTCGAAGTTGCCTTCGATGGCATGAGCATCGAGTTGTAAATACAGTCTGTGAGGCGACACCAGACCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/458990‑458833‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcccacaGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTGGATAAGTACCT > NC_002947/458918‑459064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |